Showing posts with label BioRxiv. Show all posts
Showing posts with label BioRxiv. Show all posts

Tuesday, May 15, 2018

[Ornithology • 2017] Heliangelus zusii An Extinct Hummingbird Species That Never Was: A Cautionary Tale About Sampling Issues in Molecular Phylogenetics


Phylogenetic relationships among species and populations of AglaiocercusTaphrolesbia, the Rogitama hybrid hummingbird, and Heliangelus zusii based on sequences of the ND2 mitochondrial gene. Strongly supported nodes (0.95 Bayesian posterior probability, 80% maximum-likelihood bootstrap) are indicated with black dots. Although nodal support for deep branches is low, note that both the Rogitama bird and H. zusii have haplotypes closely allied to those of A. kingii from the Eastern Andes of Colombia, indicating they are both hybrids sharing A. kingii as female parent.
in Perez-Eman, Ferreira, Gutierrez-Pinto, et al., 2017.
 DOI:  10.1101/149898  

Illustrations courtesy of Lynx Edicions; Handbook of the Birds of the World, Vol. 15, 1999.

Abstract
The Bogota Sunangel (Heliangelus zusii) was described based on a historical specimen lacking locality data as a striking - and potentially extinct - new species of hummingbird more than two decades ago. However, it was considered a dubious taxon by some researchers until a molecular study with strong species-level taxon sampling revealed its phylogenetic affinities and validated its status as a distinct species. We reanalysed existing mitochondrial DNA data together with a new data set sampling multiple populations of the Long-tailed Sylph (Aglaiocercus kingii), a species broadly distributed in the Andes of South America. In contrast to previous work, we found that H. zusii shares a haplotype with specimens of A. kingii from the Eastern Cordillera of Colombia, which is phylogenetically nested within a clade formed by populations of A. kingii from the Colombian Andes. These results suggest that H. zusii is not a distinct species, but is most likely the result of hybridization between a female A. kingii and a male of another hummingbird species. These findings highlight the importance of thorough taxonomic and geographic sampling when assessing the likelihood of hybrid origin of an organism, particularly in cases potentially involving wide-ranging species in areas where deep phylogeographic structure is likely.
Keywords: Aglaiocercus, geographic sampling, Heliangelus zusii, hybridization, phylogeography.


Figure 1. (A) Geographic ranges of Aglaiocercus kingiiAcoelestis, and Taphrolesbia griseiventris in northern South America (polygons), and geographic provenance of specimens of these species and of the Rogitama hybrid hummingbird included in molecular phylogenetic analyses (dots and star).

Figure 1. (A) Geographic ranges of Aglaiocercus kingiiAcoelestis, and Taphrolesbia griseiventris in northern South America (polygons), and geographic provenance of specimens of these species and of the Rogitama hybrid hummingbird included in molecular phylogenetic analyses (dots and star).
(B) Phylogenetic relationships among species and populations of AglaiocercusTaphrolesbia, the Rogitama hybrid hummingbird, and Heliangelus zusii based on sequences of the ND2 mitochondrial gene. Strongly supported nodes (0.95 Bayesian posterior probability, 80% maximum-likelihood bootstrap) are indicated with black dots. Although nodal support for deep branches is low, note that both the Rogitama bird and H. zusii have haplotypes closely allied to those of A. kingii from the Eastern Andes of Colombia, indicating they are both hybrids sharing A. kingii as female parent.

 Illustrations courtesy of Lynx Edicions; Handbook of the Birds of the World, Vol. 15, 1999.



Jorge L. Perez-Eman, Jhoniel Perdigon Ferreira, Natalia Gutierrez-Pinto, Andres M. Cuervo, Laura N. Cespedes, Christopher C. Witt and Carlos Daniel Cadena. 2017. An Extinct Hummingbird Species That Never Was: A Cautionary Tale About Sampling Issues in Molecular Phylogenetics. bioRxiv. DOI:  10.1101/149898 

Monday, April 17, 2017

[Ornithology • 2016] Sporophila iberaensis • A New Species of Seedeater (Thraupidae: Sporophila) from the Iberá grasslands, in northeast Argentina


Sporophila iberaensis 
Di Giacomo & Kopuchian, 2016 

Iberá Seedeater |  DOI:  10.1101/046318 

Abstract
 We describe a new species of capuchino of the genus Sporophila (Emberizidae) of the Esteros del Ibera, province of Corrientes, in northeastern Argentina. This species would have remained unidentified due to lack of ornithological explorations in the central area of the Esteros del Iberá. It has been confused with immature individuals of other Sporophila species. We made observations of behavior and habitat, playback experiments, comparative analyzes of the vocalizations and plumage with other sympatric species of the same genus, and we found this species, which we have named Sporophila iberaensis, inhabiting wet grasslands from the edges of the marshes, having a unique vocal repertoire and a unique plumage. Because of its restricted geographical distribution and the threats that have their habitat, this new species should be categorized as Vulnerable on the IUCN Red List.

Key words: Argentina, conservation, Iberá wetland, new species, grassland birds, Sporophila, vocalizations

FIG. 1. Plumage patterns of males Iberá’s Seedeater Sporophila iberaensis sp. nov. and their habitat in Esteros del Iberá, Corrientes, Argentina.
Top left: An individual with incomplete collar. Top right: An individual with incipient dorsal collar and a detail of the grass Paspalum rufum whose seeds are eaten for seedeaters. Bottom left: An individual with full collar and fresh plumage at the beginning of the breeding season, and a detail of the grass Andropogon lateralis, the dominant plant of the Ibera’s grasslands. Bottom right: individual with full collar but with worn plumage as observed towards the end of the breeding season (based on holotype MACN-72854).
Background: Typical habitat of S. iberaensis with wet grasslands dominated by Andropogon lateralis and Paspalum sp. 12 around a marsh.
Original painting by Aldo Chiappe. DOI:  10.1101/046318 

Sporophila iberaensis, sp. nov. 
Iberá Seedeater, Capuchino del Iberá (Spanish),  Caboclinho-do-Iberá (Portuguese)


Etymology.- The specific epithet is a latinized adjectival form referring to the species main range at the ecosystem of the Esteros del Iberá (Iberá’s marshes) in the province of Corrientes, Argentina. “Iberá” is a term derivate from guaraní native language that means “glittering waters”. Esteros del Iberá is a complex mosaic of lagoons, rivers, wet grasslands and subtropical forests with an extension of 14,000 sq.km. and most of the area is protected as a Provincial Reserve, including private and government properties. By naming this species, we wish to draw attention for the conservation of the Esteros del Iberá as an remarkable reservoir of a rich cultural and natural diversity of our country.


Adrian Di Giacomo, Bernabe López-Lanús and Cecilia Kopuchian. 2017. A New Species of Seedeater (Emberizidae: Sporophila) from the Iberá grasslands, in northeast Argentina.   bioRxiv. 046318. DOI:  10.1101/046318

 Di Giacomo, A. S, and C. Kopuchian 2016. Una nueva especie de capuchino (Sporophila: Thraupidae) de los Esteros del Iberá, Corrientes, Argentina. Nuestras Aves. 61: 3-5.



Thursday, April 6, 2017

[Ichthyology • 2017] Neotrygon vali • A New Blue-spotted Maskray (Myliobatoidei: Dasyatidae) from the Solomon Archipelago Described from Its DNA Barcode


Neotrygon vali   Borsa, 2017

Abstract

The blue-spotted maskray from Guadalcanal Island (Solomon archipelago) is morphologically distinct from Neotrygon kuhlii with which it was previously confused and it is genetically distinct from all other species in the genus Neotrygon. It is here described as a new species, Neotrygon vali sp. nov., on the basis of its nucleotide sequence at the cytochrome oxidase 1 (CO1) gene locus. It is unique in the genus Neotrygon by the possession of nucleotide T at nucleotide site 420 and G at nucleotide site 522 of the CO1 gene.

Keywords: new species, CO1 gene, molecular diagnosis, taxonomy  

Figure 1. Guadalcanal maskray Neotrygon vali   sp. nov. 
showing the pigmentation patterns that differentiate it from N. kuhlii from Vanikoro.

 Photographed by M.A. Rosenstein near Mbike Wreck, November 2014. 

 Etymology:vali” is the word for stingray in Gela, one of the languages spoken in Guadalcanal. Epithet vali is intended to refer to the common name of the species among Guadalcanal fishers and it is a noun in apposition. Proposed vernacular names: Guadalcanal maskray (English); vali Guadalcanal (Gela); pastenague masquée à points bleus de Guadalcanal (French).


Philippe Borsa. 2017. Neotrygon vali (Myliobatoidei: Dasyatidae), A New Blue-spotted Maskray from the Solomon Archipelago Described from Its DNA Barcode.  bioRxiv preprint. DOI: 10.1101/106682


Saturday, December 31, 2016

[Herpetology • 2017] How Draco Lizards Fly: A Novel Type of Wing in Animals


 formation of the composite wing during the initial phases of the gliding flight of Draco dussumieri seen from the front (left) and from below (right; corresponding photos of the same phases). The lizard jumps from the tree, reorients the body dorsoventrally and starts to spread the anterior ribs; the extended arms reach behind the back (top). The anterior ribs are further spread by the trunk musculature; the hands grasp the leading edge of the patagium and pull it forward (middle). The patagium is fully extended and controlled by the forelimbs; the glide path becomes more horizontal (bottom). White arrows indicate the positions of the hands.
Dehling, 2016.   DOI: 10.1101/086496 


Abstract

Flying lizards of the genus Draco are famous for their gliding ability, using an aerofoil formed by winglike patagial membranes and supported by elongated thoracic ribs. It has remained unknown, however, how the lizards manoeuvre during flight. Here, I show that the patagium is deliberately grasped and controlled by the forelimbs while airborne. This type of composite wing is unique inasmuch as the lift-generating and the controlling units are formed independently by different parts of the body and are connected to each other only for the duration of the flight. The major advantage for the lizards is that the forelimbs keep their entire movement range and functionality for climbing and running when they are not used as the controlling unit of the wing. These findings not only shed a new light on the flight of Draco lizards but also have implications for the interpretation of gliding performance in fossil species.

  KEYWORDS: Draco, flying lizard, gliding flight, patagium


J Maximilian Dehling. 2016. How Lizards Fly: A Novel Type of Wing in Animals.
 BioRxiv. DOI: 10.1101/086496 

Dragon lizards fly by grabbing their fold-up wings with ‘hands’ newscientist.com/article/2114847-dragon-lizards-fly-by-grabbing-their-fold-up-wings-with-hands