Showing posts with label Phylogenomics. Show all posts
Showing posts with label Phylogenomics. Show all posts

Friday, May 15, 2026

[Botany • 2026] Leptochilus yangjiangensis (Polypodiaceae) • A New Fern Species From Guangdong, China


Leptochilus yangjiangensis F. G. Wang, Y. Huang & H. J. Zhou,

in Zhou, T. Wang, Huang, Fang, Zhang, G.-D. Chen, H.-F. Chen et F.-G. Wang, 2026. 
阳江线蕨  ||  DOI: doi.org/10.1002/ece3.73621

ABSTRACT
A new fern species, Leptochilus yangjiangensis (Polypodiaceae), was discovered during field surveys in Ziluo Mountain, Yangjiang City, Guangdong Province, China. This study provides a detailed morphological description and illustrations of the new species. Morphologically, this species resembles Leptochilus pedunculatus and L. ovatus in plant height, petiole morphology, and soral morphology, but differs from them in its coriaceous laminae and lanceolate fertile fronds. To confirm its taxonomic status, phylogenetic analyses based on three plastid genome regions (rbcL, trnL-F, and rps4+rps4-trnS) indicated that the new species forms a distinct and well-supported monophyletic clade and is sister to L. dolichophyllus. Furthermore, the complete plastid genome of this new species is reported for the first time. Preliminarily assessed as Data Deficient (DD) according to IUCN guidelines, this new species enriches the diversity of Leptochilus.

Keywords: Leptochilus, morphology, new species, phylogenetic analysis, plastid genome

Habitat and morphology of Leptochilus yangjiangensis.
(A) Habitat. (B) Whole plant. (C) Habit. (D) Close-up of fronds with sori. (E) Scale structure under a biological microscope. (F) Spore morphology under a scanning electron microscope.
Photographs by Guo-Di Chen (A–D).

Leptochilus yangjiangensis F. G. Wang, Y. Huang & H. J. Zhou, sp. nov. 

Diagnosis: Leptochilus yangjiangensis is similar to both L. pedunculatus and L. ovatus, but can be distinguished by the following diagnostic characters (Table 2): (1) lamina coriaceous (vs. herbaceous in both L. pedunculatus and L. ovatus); (2) fertile fronds lanceolate (vs. ovate-lanceolate in both L. pedunculatus and L. ovatus); (3) life form lithophytic (vs. lithophytic in L. pedunculatus and hemiepiphytic in L. ovatus). Additionally, it can be distinguished from its sister species L. dolichophyllus by the smaller plant size (fertile fronds 26.0–43.0 cm long vs. 43.0–60.0 cm long in L. dolichophyllus) and distinct life form (lithophytic vs. hemiepiphytic in L. dolichophyllus).


Hua-Jing Zhou, Ting Wang, Yi Huang, Yu-Han Fang, Bin Zhang, Guo-Di Chen, Hong-Feng Chen and Fa-Guo Wang. 2026. Leptochilus yangjiangensis (Polypodiaceae), a New Fern Species From Guangdong, China. Ecology and Evolution. DOI: doi.org/10.1002/ece3.73621 [14 May 2026]
 

Monday, April 6, 2026

[Cnidaria • 2026] Rhytisma acoronatum, R. calyaceum, R. karibu, ... • Phylogenomics-guided Revision of the Genus Rhytisma Alderslade, 2000 (Octocorallia: Malacalcyonacea: Lemnaliidae), with Descriptions of Six New Sspecies

 

(a, b) Rhytisma karibu sp. nov.
(c, d) R. acoronatum sp. nov. 
(e, f) R. oblongum sp. nov.
 (c) R. inaequale sp. nov., with expanded polyps 
(d) R. calyaceum sp. nov., with partially expanded polyps 
(e) R. sperkolae sp. nov.polyps partly expanded

Samimi-Namin, Benayahu, Durkin, Ekins, Quattrini & McFadden, 2026
Photographs by Y. Benayahu, and M. Ekins.
 
The genus Rhytisma Alderslade, 2000 (Octocorallia: Malacalcyonacea: Lemnaliidae), formerly comprising four nominal species (R. fulvum, R. fuscum, R. monticulum and R. rubiginosum), is revised using an integrative approach. We combine morphological and phylogenomic data for newly collected and historical specimens. A neotype is designated for R. fulvum and a lectotype for R. fuscum to stabilise the application of these names. Six new species are described from the Indo-Pacific: R. acoronatum sp. nov., R. calyaceum sp. nov., R. oblongum sp. nov., R. inaequale sp. nov., R. karibu sp. nov. and R. sperkolae sp. nov. Species delimitation is supported by discrete combinations of morphological characters – particularly those of the tentacle and polyp sclerites – as well as multi-locus DNA barcoding and phylogenomic analyses of conserved elements (UCE and exon loci). Our findings highlight the diagnostic value of tentacle sclerites and reveal extensive species-level diversity that was previously obscured by insufficient morphological examination. The revised genus currently comprises 10 valid species, many of which display restricted geographic distributions, reflecting patterns of regional endemism in Indo-Pacific octocoral assemblages. These results underscore the importance of integrative taxonomy in uncovering hidden biodiversity.
 
Keywords: biogeography, DNA barcoding, endemism, Indo-Pacific, integrative taxonomy, neotype, soft corals, species delimitation, taxonomic revision, ultraconserved elements

Underwater images of Rhytisma species in their respective type localities.
(a, b) Rhytisma fulvum yellow colour and grey colour morphs, polyps partly expanded
(c) R. inaequale sp. nov., with expanded polyps (d) R. calyaceum sp. nov., with partially expanded polyps
(e) R. sperkolae sp. nov., mat morphology reflects underlying irregular reef substrate, polyps partly expanded. (f) R. monticulum with expanded polyps.
Photographs by (a–c, e) Y. Benayahu, (d, f) M. Ekins.

Underwater images of Rhytisma species in their respective type localities.
(a, b) Rhytisma karibu sp. nov., growing on seagrass blades and reef substrate (c, d) R. acoronatum sp. nov. (e, f) R. oblongum sp. nov. 
Photographs by (a, b, e, f) Y. Benayahu, and (c, d) M. Ekins.

Rhytisma acoronatum sp. nov., R. calyaceum sp. nov., 
R. oblongum sp. nov., R. inaequale sp. nov., 
R. karibu sp. nov. and R. sperkolae sp. nov. 


Kaveh Samimi-Namin, Yehuda Benayahu, Kathleen M. Durkin, Merrick Ekins, Andrea M. Quattrini and Catherine S. McFadden. 2026. Phylogenomics-guided Revision of the Genus Rhytisma Alderslade, 2000 (Octocorallia: Malacalcyonacea: Lemnaliidae), with Descriptions of Six New Sspecies. Invertebr Syst. 40(3); IS25068. DOI: doi.org/10.1071/IS25068   [30 March 2026]

Saturday, April 4, 2026

[Entomology • 2026] Ancyroleon, Melanobaliga, Orientaleon gen. n., ... • UCE Phylogenomics improves the Classification of the cosmopolitan Pit-building Antlion tribe Myrmeleontini (Neuroptera: Myrmeleontidae: Myrmeleontinae)

 

Banyaleon Zheng & Liu nom. n.Ancyroleon Zheng & Liu gen. n., 
Baligaptes 
Zheng & Liu gen. n. Melanobaliga Zheng & Liu gen. n., 
Orientaleon 
Zheng & Liu gen. n., Sinobaliga Zheng & Liu gen. n., ...

in Zheng, Badano, Machado, Tu, U. Aspöck, H. Aspöck, Nel, Winterton et Liu, 2026. 

Abstract
Myrmeleontini is a widespread antlion tribe within the lacewing family Myrmeleontidae, well known for its larvae building cone-shaped pits in sandy soil to trap prey. The monophyly of the tribe is well supported, but the monophyly of many genera within the tribe as well as the definition of the genus Myrmeleon Linnaeus has long been questioned. Here, we present a phylogenomic analysis of Myrmeleontini with emphasis on the Eurasian fauna, using ultraconserved elements (UCE) data. Our results recovered Myrmeleon as a diverse grade, with Baliga Navás, Callistoleon Banks, Euroleon Esben-Petersen, Hagenomyia Banks and Megistoleon Navás deeply nested within it. Based on our sampling of type species of many genera (including those synonymized with Myrmeleon) and detailed morphological comparisons, we provide a new phylogeny-based classification of Myrmeleontini. Accordingly, Myrmeleon s. str. only refers to the formerly recognized M. formicarius group from Palaearctic region. The status of 12 genera that were previously considered as junior synonyms of Myrmeleon is restored (i.e., Banyaleon Zheng & Liu nom. n.Bordus Navás stat. rev.Callistoleon Banks stat. rev.Cocius Navás stat. rev.Enza Navás stat. rev.Macroleon Banks stat. rev.Moreyus Navás stat. rev.Morter Navás stat. rev.Neleon Navás stat. rev.Neseurus Navás stat. rev.Myrmeleodes Navás stat. rev. and Tafanerus Navás stat rev.), while Neohornius stat. rev., previously treated as a subgenus of Myrmeleon, is herein elevated to genus. Additionally, based on comprehensive sampling from the Oriental region, five new genera from this region are described, that is, Ancyroleon Zheng & Liu gen. n., Baligaptes Zheng & Liu gen. n. Melanobaliga Zheng & Liu gen. n., Orientaleon Zheng & Liu gen. n. and Sinobaliga Zheng & Liu gen. n.

Keywords: biogeography, classification, lacewing, phylogeny, systematics


Banyaleon Zheng & Liu nom. n.
Bordus Navás stat. rev.
Callistoleon Banks stat. rev.
Cocius Navás stat. rev.
Enza Navás stat. rev.
Macroleon Banks stat. rev.
Moreyus Navás stat. rev.
Morter Navás stat. rev.
Neleon Navás stat. rev.
Neseurus Navás stat. rev.
Myrmeleodes Navás stat. rev. 
Tafanerus Navás stat rev.
Neohornius stat. rev.
 five new genera:
 Ancyroleon Zheng & Liu gen. n., 
Baligaptes Zheng & Liu gen. n. 
Melanobaliga Zheng & Liu gen. n., 
Orientaleon Zheng & Liu gen. n. 
Sinobaliga Zheng & Liu gen. n.

 
Yuchen Zheng, Davide Badano, Renato Jose Pires Machado, Yuezheng Tu, Ulrike Aspöck, Horst Aspöck, André Nel, Shaun W. Winterton and Xingyue Liu. 2026. UCE Phylogenomics improves the Classification of the cosmopolitan Pit-building Antlion tribe Myrmeleontini (Neuroptera: Myrmeleontidae: Myrmeleontinae). Systematic Entomology. DOI: doi.org/10.1111/syen.70040 [27 March 2026]
 

Thursday, February 19, 2026

[Ichthyology • 2025] Allohistium anas • Genomic and Phenotypic Delimitation of Species in a Temperate Aquatic Biodiversity Hotspot

 
Allohistium anas Near & MacGuigan,

in MacGuigan, Taylor, Ghezelayagh, Wood, Simmons, Mollish et Near, 2025. 
Cinder Darter  ||  DOI: doi.org/10.1093/sysbio/syaf083 

Abstract
Biologists have relied on morphological characteristics to identify, define, and formally describe species for the past 250 years. The advent of phylogenetic species concepts and the introduction of molecular data have spawned new species delimitation methods applicable to a wide range of eukaryotic lineages. However, these approaches heavily emphasize genomic data, often overlooking phenotypic traits. We present and implement a species delimitation approach that utilizes genome-wide markers from ddRAD-seq and meristic morphological traits, which have long been used to identify and delineate fish species. Our methodology employs unsupervised machine learning to analyze morphological data without a priori species assignments, allowing phenotypic patterns to emerge independently from genomic-based species delimitation. We apply our combined genomic and phenotypic methodology to the freshwater systems of Southeastern North America, a biodiversity hotspot where conservation efforts are hampered by an incomplete knowledge of species diversity. Our investigation focuses on the darter clade Allohistium, a threatened lineage comprising two described species. Through phylogenomic, population genetic, and phenotypic model comparisons, we provide evidence supporting the delimitation of a third species of Allohistium, which we formally describe. Our approach shows how unsupervised machine learning can reveal cryptic morphological diversity that might otherwise be obscured by taxonomic preconceptions. This study demonstrates that model testing using diverse lines of evidence yields a more comprehensive, data-driven hypothesis of species diversity.

Darters, ddRAD-seq, methodology, North America, phenotype, species delimitation

Live photographs of Allohistium specimens.
Photo credit to Jon M. Mollish. YPM = Yale Peabody Museum, YFTC = Yale Fish Tissue Collection.

Allohistium anas Near and MacGuigan new species
Cinder Darter

Diagnosis. Allohistium anas differs from Allohistium cinereum and Allohistium maydeni by a higher number of lateral line scales (Supplementary Table S4), modally 43 versus 42 vertebrae (Shepard and Burr 1984), a larger proportion of individuals with greater than 80% of the cheek covered with scales, and more than 50% of the individuals with 10–40% of the nape covered with scales. In addition, Allohistium anas is never resolved as the sister lineage of Allohistium cinereum sensu stricto in mtDNA gene trees (Powers et al. 2004, 2012) or phylogenomic analyses of ddRAD-seq loci (see below). Allohistium maydeni differs from Allohistium anas and Allohistium cinereum in having modally 11 versus 12 dorsal fin spines (Supplementary Table S5; Powers et al. 2012), 12 versus 13 dorsal fin rays (Supplementary Table S6; Powers et al. 2012), and the presence of conspicuous red coloration on the skin covering the upper and lower oral jaws (Fig. 2).

Etymology. The species name anas is from the Latin word for duck, in reference to the distribution of the species in the Duck River system. The common name Cinder Darter is in reference to the common name of A. cinerum, the Ashy Darter.


Daniel J MacGuigan , Adam Taylor , Ava Ghezelayagh , Julia E Wood , Jeffrey W Simmons , Jon M Mollish and Thomas J Near. 2025. Genomic and Phenotypic Delimitation of Species in a Temperate Aquatic Biodiversity Hotspot. Systematic Biology. syaf083. DOI: doi.org/10.1093/sysbio/syaf083 [27 November 2025]


Friday, January 23, 2026

[Ichthyology • 2025] Psalidodon terezinhae, P. velhochico & P. paiva Unraveling a 150-Year-Old Enigma: Psalidodon rivularis (Characiformes: Acestrorhamphidae: Acestrorhampinae), a Species Complex or a Polymorphic Species


 (a, b) Psalidodon terezinhae 
 (c, d) h  P. velhochico 
 (e, f) P. paiva  
Rodrigues-Oliveira, Assis, Pimente, Soares, Silva, Rocha, Menegidio, Pasa & Kavalco, 2025


Abstract
Psalidodon rivularis, a fish endemic to the São Francisco River Basin and known as “piaba do córrego,” has long been regarded as a widely distributed species complex, exhibiting remarkable morphological and cytogenetic variation, even in sympatry. This study aims to determine whether P. rivularis represents a single polymorphic species or a group of cryptic species. We analyzed meristic, morphometric, and karyotypic data from 419 specimens identified as P. rivularis, as well as from the related species Astyanax turmalinensis and Hyphessobrycon santae. Additionally, we inferred the phylogeny of the group using NGS data from 25 individuals, incorporating both mitochondrial and nuclear genomic sequences. Our integrative results support the recognition of at least five distinct species within the P. rivularis complex. The true P. rivularis (called morphotype 1) has 46 chromosomes, while the others have 50 and differ in both morphology and distribution. One of these corresponds to Psalidodon santae comb. nov.—which includes A. turmalinensis as a junior synonym—and three others are newly described species. These findings clarify the diversity of fishes in the São Francisco River Basin and highlight the importance of conserving its unique freshwater ecosystems.

Keywords: cytotypes; cryptic species; phylogenomics; morphometrics

Psalidodon terezinhae (a) holotype, LaGEEvo 27-4521, 53.0 mm SL, Lage stream, Abaeté River drainage and (b) LaGEEvo 35-529, 45.0 mm SL, Funchal River, Indaiá River drainage.
  P. velhochico (c) holotype, LaGEEvo 28-5079, 77.0 mm SL, Rasga Canga Waterfall, São Francisco River drainage and (d) LaGEEvo 51-4999, 75.0 mm SL, Casca d’Anta Waterfall, São Francisco River drainage.
P. paiva 
(e) holotype, LaGEEvo 29-2072, 62.0 mm SL, Bonito stream, Borrachudo River drainage and (f) LaGEEvo 55, 34.5 mm SL, Usina do Abaeté dam Lagoon, Abaeté River drainage.

Psalidodon terezinhae sp. nov.


Psalidodon velhochico sp. nov.

Etymology. The specific epithet velhochico is used as a noun in apposition and refers to the popular nickname of the São Francisco River in Brazil, affectionately called “Velho Chico” (“Old Chico”) by Brazilians.


Psalidodon paiva sp. nov.

Etymology. The specific epithet is used as a noun in apposition and honors the Paiva family, whose life, portrayed in the Brazilian Oscar-winning film “Ainda Estou Aqui” (2024), was profoundly affected by the imprisonment, disappearance, and execution of the family patriarch, Rubens Paiva, during the Brazilian military dictatorship.


Igor Henrique Rodrigues-Oliveira, Priscila Martins de Assis, Luiz Guilherme Pereira Pimente, Rafael Augusto Silva Soares, Iuri Batista da Silva, Renan Rodrigues Rocha, Fabiano Bezerra Menegidio, Rubens Pasa and Karine Frehner Kavalco. 2025. Unraveling a 150-Year-Old Enigma: Psalidodon rivularis (Acestrorhamphidae: Acestrorhampinae), a Species Complex or a Polymorphic Species. Biology. 14(12), 1793. DOI: doi.org/10.3390/biology14121793 [16 December 2025]
 
Simple Summary: This study investigates a group of closely related fish species from southeastern Brazil known as the Psalidodon rivularis complex. These fishes are very similar in appearance, which has made it difficult to know exactly how many species exist. By combining information from their body shape, body measurements, chromosome counts, and DNA, we found that what was once thought to be a single species includes at least five distinct ones. The true P. rivularis has 46 chromosomes, while the others have 50. One of them corresponds to Psalidodon santae, which was previously classified in another genus, and three are new species described here. Our results also suggest that their diversity arose through processes such as changes in chromosome numbers, hybridization between populations, and morphological divergence, potentially within broader scenarios that may involve vicariant or adaptive processes. These fishes live in small rivers and streams of the Upper São Francisco River basin, environments that are rich in unique species but threatened by human activities. Recognizing and protecting these new species is essential for conserving the biodiversity of Brazilian freshwater ecosystems.

Thursday, January 8, 2026

[Botany • 2026] Aletris medogensis (Nartheciaceae) Integrating Morphology and Chloroplast Genomics: A New East Asian Species of Aletris with Insights Into Regional Phylogeny and Evolution

 

Aletris medogensis  W.B.Ju, Y.L.Qiu & Bo Xu,

in X. Li, Qiu, J.-T. Li, Xu, Yu et Ju, 2026. 
墨脱粉条儿菜  ||  DOI: doi.org/10.1002/ece3.72654

ABSTRACT
The genus Aletris L. (Nartheciaceae) encompasses approximately 21–24 species distributed in East Asia and North America, yet taxonomic ambiguity persists due to overlapping morphological traits among closely related species. During fieldwork in southeastern Xizang, China, a morphologically distinct candidate species, Aletris medogensis, was discovered. To validate its taxonomic status and explore evolutionary relationships within East Asian Aletris, we integrated detailed morphological observation with comparative chloroplast phylogenomics. The newly proposed species is characterized by creeping stolons, narrow leaves, and glandular-pubescent inflorescences. Comparative analysis of 14 East Asian Aletris complete chloroplast genomes revealed a conserved quadripartite structure with species-specific variations, including pseudogenization of ycf1, loss of rrn4.5, and shifts in IR boundaries. Phylogenomic analyses strongly supported A. medogensis as a distinct species closely related to A. alpestris. We identified 18 hypervariable regions as potential molecular markers and detected signals of positive selection in genes ccsA, cemA, and rps12, suggesting adaptive evolution. This study confirms the recognition of A. medogensis as a new species endemic to the eastern Himalayas and demonstrates the utility of chloroplast genomics in resolving taxonomic complexity and understanding evolutionary mechanisms in Aletris.

Keywords: Aletris medogensis, comparative chloroplast genome analysis, East Asia, IR boundary dynamics, molecular markers, Nartheciaceae, selective pressure

Aletris medogensis. Lateral (a), front (b), and back (c) views of the flower. (d) Stamens. (e) Ovary and stigma. (f) Inflorescence. (g) Scape. (h) Bracteate leaf. (i) Leaf. (k) Roots. (l) Plant.

Aletris medogensis W.B.Ju, Y.L.Qiu & Bo Xu, sp. nov.

Diagnosis: Aletris medogensis is morphologically most similar to Aletris alpestris, but it can be distinguished from the latter in having narrower leaves (0.45–0.9 mm wide vs. 1–2.5 mm wide) and an obtuse apex (vs. an acuminate apex); the flower pedicels are extremely short, the rachis has densely glandular hairs (vs. sparsely puberulent), the two bracts are unequal in length and shorter than the flowers (vs. one of them 1–4 × flower length). Lobes are obtuse to rounded at the apex (vs. the apex being obtuse to acute).

 Etymology: Located in southeastern Xizang Autonomous Region, Medog (Pinyin spelling “motuo”) County is one of the biodiversity hotspots in China, which has rich plant diversity in the Eastern Himalaya (Qiu et al. 2022). The new species, Aletris medogensis, is found in this region and is named after the geographic location. Its Chinese name, mo tuo fen tiao er cai (墨脱粉条儿菜).

Habit of Aletris medogensis on moss-covered rocks along streams
(photographed by Wen-Bin Ju).
 


Xiong Li, Yong-Ling Qiu, Jiang-Tao Li, Bo Xu, Qi Yu and Wen-Bin Ju. 2026. Integrating Morphology and Chloroplast Genomics: A New East Asian Species of Aletris (Nartheciaceae) With Insights Into Regional Phylogeny and Evolution. Ecology and Evolution. DOI: doi.org/10.1002/ece3.72654 [05 January 2026]

Tuesday, January 6, 2026

[Mammalogy • 2025] Mustela mopbie • Phylogenomics of the Genus Mustela (Carnivora: Mustelidae) with Description of A New Species from China


Mustela mopbie  

in Wei, Cao, He, Abramov, Wang, J. Fu, Li, Yang, L.-Q. Fu, Huang, Zhou, Wen et Ge, 2025.

Abstract
Weasels represent the most widely distributed and diverse lineage within the family Mustelidae. They have experienced adaptive radiation and have long been the subject of significant taxonomic debates. This study undertakes a comprehensive study of this group, employing morphological measurements, mitochondrial genomes, nuclear genes, and single copy orthologs extracted from whole genome data. Based on the outcomes of phylogenetic tree construction using orthologous genes, it is ultimately verified that the genera Mustela and Neogale are independent genera, thereby resolving the controversy regarding the species they encompass. Through molecular systematics and morphological studies, a putative Mustela species collected from Mabian Dafengding National Nature Reserve in Sichuan is confirmed as a new species, designated Mustela mopbie sp. nov. This new species exhibits molecular phylogenetic affinity with M. altaica and M. nivalis, yet shares morphological similarities with M. kathiah, M. nivalis and M. aistoodonnivalis. Notably, it is considerably smaller than these species and possesses distinctive body coloration and tail morphology. This study provides a detailed description of this new species and demonstrates that larger datasets yield more robust phylogenetic signal. Furthermore, we observed substantial incongruence between mitochondrial and nuclear gene trees, suggesting potential genomic introgression between this new species and its closely related congeners (M. altaica and M. nivalis).

Keywords: cytonuclear discordance, genetic distance, morphological differentiation, Mustela, systematic classification



Mustela mopbie sp. nov.



Qiu-Jin Wei, Lei Cao, Xing-Cheng He, Alexei Abramov, Jin Wang, Jie Fu, Rui Li, Qi-Sen Yang, Li-Qiang Fu, Yao-Hua Huang, Cai-Quan Zhou, Zhi-Xin Wen and De-Yan Ge. 2025. Phylogenomics of the Genus Mustela with Description of A New Species from China. Journal of Systematics and Evolution. DOI: doi.org/10.1111/jse.70029 [14 November 2025]

Sunday, January 4, 2026

[Entomology • 2022] Neuroterus valhallaDescribing Biodiversity in the Genomics Era: A New Species of Nearctic Cynipidae Gall Wasp and its Genome


Artist’s illustration of the lifecycle of Neuroterus valhalla, a cynipid gall wasp that uses chemicals to induce live oak trees to grow protective crypts, or galls, around its eggs. N. valhalla females (A and D2) lay twice per year in alternating generations at different locations on trees. One generation emerges in February or March, laying eggs in live oak flowers (B) and inducing galls (C1) where adults will emerge in 2-3 weeks. These lay eggs at branching stem nodes (E), inducing galls (F1) from which adults will emerge 11 months later. Ecologists discovered N. valhalla at Rice University, and have yet to find a male member of the species (center). 

in Brandão-Dias, Zhang, Pirro, Vinson, Weinersmith, Ward, Forbes et Egan, 2022. 
Illustration by Barbara Rossi

ABSTRACT
Gall wasps (Hymenoptera: Cynipidae) specializing on live oaks in the genus Quercus (subsection Virentes) are a relatively diverse and well‐studied community with 14 species described to date, albeit with incomplete information on their biology, life history and genetic structure. Incorporating an integrative taxonomic approach, we combine morphology, phenology, behaviour, genetics and genomics to describe a new species, Neuroterus valhalla sp. nov. The alternating generations of this species induce galls on the catkins and stem nodes of Quercus virginiana and Quercus geminata in the southern United States. We describe both generations in the species' life cycle, and primarily use samples from a population in the centre of Houston, Texas, thus serving as an example of the undescribed biodiversity still present in well‐travelled urban centres. In parallel, we present a draft assembly of the N. valhalla genome providing a direct link between the type specimen and reference genome. The genome of N. valhalla is the smallest reported to date within the tribe Cynipini, providing an important comparative contrast to the otherwise large genome size of cynipids. While relatively small, the genome was found to be composed of >64% repetitive elements, including 43% unclassified repeats and 11% retrotransposons. A preliminary ab initio and homology‐based annotation revealed 32,005 genes, and a subsequent orthogroup analysis grouped 18,044 of these to 8186 orthogroups, with some evidence for high levels of gene duplications within Cynipidae. A mitochondrial barcode phylogeny linked each generation of the new species and a phylogenomic ultraconserved element (UCEs) phylogeny indicates that the new species groups with other Nearctic Neuroterus. However, both phylogenies present the genus Neuroterus in North America as polyphyletic.
 
  Neuroterus valhalla life cycle.
(A) Stem node (asexual) generation female; (B) oviposition in developing catkin buds; (C) N. valhalla's oval gall on the catkin inflorescence (C1), which are not to be mistaken with Andricus quercuslanigera's fusiform galls on the stalk of the catkin (C2); (D) unknown sexual generation male (D1), catkin (sexual) generation female (D2); (E) oviposition in stem nodes; (F) N. valhalla's cryptic galls on stem nodes (F1), not to be mistaken with Bassettia pallida's internode clustered cryptic galls (F2). Green background highlights the asexual (stem node) generation, while yellow background highlights the sexual (catkin) generation.  
Illustration by Barbara Rossi
 
Neuroterus valhalla sp. nov.


 Pedro F. P. Brandão-Dias, Yuanmeng Miles Zhang, Stacy Pirro, Camila C. Vinson, Kelly L. Weinersmith, Anna K. G. Ward, Andrew A. Forbes and Scott P. Egan. 2022. Describing Biodiversity in the Genomics Era: A New Species of Nearctic Cynipidae Gall Wasp and its Genome. Syst Entomol. 47: 94-112. DOI: doi.org/10.1111/syen.12521 [10 January 2022]

• Incorporating an integrative taxonomic approach, we describe a new species, Neuroterus valhalla sp. nov. alongside its genome sequence, highlighting the parallel between a type specimen and a reference genome.
• We describe it primarily from a population in the centre of Houston, Texas, thus serving as an example of the undescribed biodiversity still present in well-travelled urban centres.
• The genome of N. valhalla is the smallest reported to date within the tribe Cynipini, with evidence of extensive gene duplications, sparking a discussion on the mechanisms behind Cynipidae's large genomes.

Tuesday, December 16, 2025

[Cnidaria • 2025] Pavona giannii • A New Reef-dwelling Coral (Hexacorallia: Scleractinia: Agariciidae), with an overview of the skeletal morphology of the type specimens of the genus Pavona

 

Pavona giannii  
Benzoni, 2025 
 

Abstract
Hard coral species in the agariciid genus Pavona are common in shallow and mesophotic coral reef communities across the Indo-Pacific, but their taxonomy has long been overlooked. Pavona giannii sp. nov. is here described based on newly collected material across the Indian Ocean, and historical museum specimens. In vivo and skeletal morphological features are described, diagnostic characters measured, and comparison with congeners performed. The new species forms an encrusting corallum devoid of raised ridges on its surface. Its corallites are flush with the surface, not inclined, and less than half a corallite diameter apart. Corallites arrangement is thamnasteroid and series can form locally. Where they occur, the radial elements run over the shared walls to the adjacent series’ corallites creating a ladder-like arrangement similar to that observed over the ridges in congeners like Pavona varians and Pavona chiriquiensis. Despite the lack of ridges, P. giannii sp. nov. has morphological affinities with these two species. However, based on previously published morphometrics and meristics, P. giannii sp. nov. corallites are larger and more crowded, and the primary septa are longer and more numerous. In vivo, the new species is distinguished by fully extended white to beige tentacles during the daytime, giving it a white-bearded appearance. Despite the ecological relevance of Pavona corals, a taxonomic revision of the genus is overdue, and the existing molecular studies indicate that it is polyphyletic. Here, the proposed placement of P. giannii sp. nov. in the genus is based on morphological evidence alone and phylogenomic analyses are currently in progress.

Key words: Morphometrics, museum collections, reef-building coral, skeletal morphology, taxonomy

Holotype of Pavona giannii sp. nov. MNHN-IK-2012-14233
A. the whole colony in situ at Hyllanyia Island, Bir Ali, Yemen, prior to sampling and B. corallum of the sampled fragment. C. Top view of the corallum showing corallite arrangement and the position of some of the corallite series boundaries (dashed pink lines) marked by the presence of parallel radial elements running over and across them, and D. side view showing its even surface given by equally high and flat top margins of S1 and S2 septa, and the deep-seated fossae. Scale bars: 1 cm (B); 5 mm (C, D).

Pavona giannii sp. nov. in situ.
A. Typically white extended tentacles in the colony, from which specimen UNIMIB BAL252 was collected, encrusting a submassive Porites (living portion at the top right-hand side) at Balhaf, Yemen; B. Colony of UF 17957, Mirbat, Oman; C. Fully extended white tentacles covering the whole surface of the colony of UNIMIB SO078 at Socotra Island, Yemen; D. Colony with partially retracted tentacles allowing the polyps’ white oral disks to show, Mahé Island, Seychelles; E. Colony of UNIMIB MY069 at Mayotte Island; F. Colony with white tentacles and grey oral disks Balhaf, Yemen; G. Close-up of the polyps of colony UNIMIB BU049 with beige tentacles and white oral disks at Burum, Yemen.


 Francesca Benzoni. 2025. A New Reef-dwelling Coral, Pavona giannii sp. nov. (Scleractinia, Agariciidae), with an overview of the skeletal morphology of the type specimens of the genus PavonaZooKeys. 1260: 123-147. DOI: doi.org/10.3897/zookeys.1260.167263

Thursday, December 4, 2025

[Botany • 2025] Angiopteris guangdongensis (Marattiaceae) • A New Species From Guangdong, China

 

Angiopteris guangdongensis Wufeng Chen and Y.H. Yan,  

in W.-F. Chen, Sun, L.-J. Chen, Shu, Liang, Zheng et Yan, 2025.  
 广东观音座莲  ||  DOI: doi.org/10.1002/ece3.72447 

ABSTRACT
In this study, we confirm that the population of Angiopteris from Guangdong Province represents a distinct new species, which we describe as Angiopteris guangdongensis. Morphologically, A. guangdongensis resembles Angiopteris fokiensis but can be distinguished by its arborescent habit (reaching up to 5 m in height), robust scaly stipes, linear-lanceolate pinnules, abaxially scaly slender pinnules, sori with 7–16 sporangia, and a higher basal pinnule aspect ratio. Plastid phylogenomic analyses place A. guangdongensis as a monophyletic lineage sister to A. fokiensis. According to IUCN guidelines, the species is preliminarily assessed as ‘Data Deficient (DD)’. In addition, we report the complete plastid genome of this new species. This discovery not only provides important insights into the evolution and speciation of Angiopteris but also highlights the taxonomic oversimplification within the genus.

Keywords: ferns, Marattiaceae, morphology, phylogeny, plastid genome, taxonomy

Angiopteris guangdongensis Wufeng Chen and Y.H. Yan, sp. nov.
 (A) Habit; (B) pinnule; (C) detail of pinnule; (D) spore; (E) scale on the abaxial surface of the pinnule; (F) scale on the abaxial surface of the pinna rachis.

Angiopteris guangdongensis Wufeng Chen and Y.H. Yan, sp. nov.
(A) Habitat; (B) lamina; (C) pinnae; (D) rhizome and stipe; (E) sporangia.
Photographs by Jin-Gang Liu (A–E).

Angiopteris guangdongensis Wufeng Chen and Y.H. Yan, sp. nov. 

Diagnosis: Angiopteris guangdongensis is similar to both A. fokiensis (type locality: Fujian Province, China) and A. muralis (type locality: Guangdong Province, China), but it can be distinguished by the following diagnostic characters: (1) arborescent habit, 3–5 m tall (vs. 2–4 m in A. fokiensis and 2–3 m in A. muralis); (2) robust stipes, 9 cm in diameter, densely scaly (vs. 6 cm, sparsely scaly in both species); (3) linear-lanceolate pinnules (vs. lanceolate in A. fokiensis; ovate, lanceolate, acuminate in A. muralis); (4) pinnules densely scaly on the abaxial surface (vs. glabrous in A. fokiensis and sparsely scaly in A. muralis); (5) higher basal pinnule AR (Figures 5-8; Table 2).

Etymology: The specific epithet guangdongensis refers to Guangdong Province, China, the geographical origin of the type specimen. The species shows narrow endemism, being restricted to this region based on current distribution records.

Vernacular name: 广东观音座莲 (guang dong guan yin zuo lian).

 
Wu-Feng Chen, Wei-Yue Sun, Li-Jun Chen, Jiang-Ping Shu, Jun-Jie Liang, Yue-Bing Zheng and Yue-Hong Yan. 2025. Angiopteris guangdongensis (Marattiaceae): A New Species From Guangdong, China. Ecology and Evolution.15(11) DOI: doi.org/10.1002/ece3.72447 [09 November 2025]


Friday, November 28, 2025

[Arachnida • 2025] Phenasurya daeng • A New Genus and Species of plexippine Jumping Spider (Salticidae: Plexippini) from Thailand


Phenasurya Marathe & Maddison,
Phenasurya daeng Marathe, Maddison & Trębicki,

in Marathe, Trębicki, Janik-Superson, Samoh, Zhang et Maddison, 2025. 

Abstract
We describe a new plexippine genus and new speciesPhenasurya daeng gen. et sp. nov., with a striking red face, from Thailand. Its placement within Plexippina is supported by ultraconserved element (UCE)-based phylogenomic analyses, supplemented with a broader four-gene analysis. Morphological evidence further justifies its generic status. Phenasurya daeng is recovered near cf. Colopsus and Pancorius but is morphologically distinct from both. These findings reveal a new red-faced lineage and settle the identity of a perplexing jumping spider.

Key words: Araneae, biodiversity, Indochina, phylogenomics, systematics, taxonomy, UCE

Family Salticidae Blackwall, 1841
Subfamily Salticinae Blackwall, 1841

Tribe Plexippini Simon, 1901
Subtribe Plexippina Simon, 1901

Phenasurya daeng, male (9–17) and female (18–20).

 Phenasurya Marathe & Maddison, gen. nov.
 
Etymology. The genus name Phenasurya is derived from the Greek “phen-”, referring to appearance, and the Thai “Surya”, referring to the sun. This alludes to the face of this elegant spider, red like the setting sun.

 Phenasurya daeng Marathe, Maddison & Trębicki, sp. nov.

Etymology. The specific epithet daeng means “red” in Thai, alluding to the species’ distinctive red face.


 Kiran Marathe, Łukasz Trębicki, Katarzyna Janik-Superson, Abdulloh Samoh, Junxia Zhang, Wayne P. Maddison. 2025. Phenasurya daeng, A New Genus and Species of plexippine Jumping Spider (Salticidae, Plexippini, Plexippina) from Thailand. ZooKeys. 1259: 335-348. DOI:  doi.org/10.3897/zookeys.1259.169914 

Friday, November 14, 2025

[Arachnida • 2025] Siskiyu armilla & Cybaeozyga furtiva • Phylogenomics of North American cybaeid Spiders (Araneae: Cybaeidae), including the Description of New Taxa from the Klamath Mountains Geomorphic Province


[ C-D] Siskiyu armilla sp. nov. immature ♀, Siskiyou County CA; 
[A] Neocryphoeca beattyi ♀, Pinal County, AZ; [F] Cybaeus somesbar ♀ Bennett, 2009, Shasta County,

Hedin, Ramírez & Monjaraz-Ruedas, 2025
All images taken by M Hedin. 

Abstract
The systematics of humble-in-appearance brown spiders (“marronoids”), within a larger group of spiders with a modified retrolateral tibial apophysis (the RTA Clade), has long vexed arachnologists. Although not yet fully settled, recent phylogenomics has allowed the delimitation and phylogenetic relationships of families within marronoids to come into focus. Understanding relationships within these families still awaits more comprehensive generic-level sampling, as the majority of described marronoid genera remain unsampled for phylogenomic data. Here we conduct such an analysis in the family Cybaeidae Banks, 1892. We greatly increase generic-level sampling, assembling ultraconserved element (UCE) data for 18 of 22 described cybaeid genera, including all North American genera, and rigorously test family monophyly using a comprehensive outgroup taxon sample. We also conduct analyses of traditional Sanger loci, allowing curation of some previously published data. Our UCE phylogenomic results support the monophyly of recognized cybaeids, with strongly supported internal relationships, and evidence for five primary molecular subclades. We hypothesize potential morphological synapomorphies for most of these subclades, bringing a robust phylogenomic underpinning to cybaeid classification. A new cybaeid genus Siskiyu gen. nov. and species Siskiyu armilla sp. nov. is discovered and described from far northern California and adjacent southern Oregon and a new species in the elusive genus CybaeozygaC. furtiva sp. nov., is described from far northern California.

Key words: California, mountains, short-range endemics, taxonomy, ultraconserved elements

Images of live cybaeid spiders.
A Neocryphoeca beattyi ♀, Pinal County, AZ, RWM 22_011 B Blabomma sp ♀, San Diego County, CA, MCH 22_020
Siskiyu armilla sp. nov. immature ♀, Siskiyou County CA, MCH 24_057; patellar fracture line labeled D Siskiyu armilla sp. nov. immature ♂, Siskiyou County CA, MCH 24_057; with silk webbing presumed to belong to the spider
Cybaeota shastae ♀ Chamberlin & Ivie, 1937, East Rosebud Creek, MT F Cybaeus somesbar ♀ Bennett, 2009, Shasta County, CA, MCH 24_012.
All images taken by M Hedin, except for Neocryphoeca (RW Mendez).


 Marshal Hedin, Martín J. Ramírez and Rodrigo Monjaraz-Ruedas. 2025. Phylogenomics of North American cybaeid Spiders (Araneae, Cybaeidae), including the Description of New Taxa from the Klamath Mountains Geomorphic Province. ZooKeys. 1226: 47-75. DOI: doi.org/10.3897/zookeys.1226.140204 

Monday, November 10, 2025

[Botany • 2025] Crassicaulis guiliangii (Gesneriaceae) • Phylogenomic Reconstruction reveals deep reticulate Evolutionary History and Polyphyletic Genus Boeica (Leptoboeinae), with description of A Novel Genus


Crassicaulis Lei Cai & Mich.Möller gen. nov. 
Crassicaulis guiliangii Lei Cai & F.M.Yang, 

in F. Yang, Ling, R. Yang, Wen, Gu, Hu, Lin, Wang, J. Cai, Ren, Möller et LCai, 2025. 
粗茎苣苔属  || DOI: doi.org/10.1111/cla.70010  
 
Abstract
The subtribe Leptoboeinae (Gesneriaceae) has undergone numerous taxonomic revisions due to ambiguous generic boundaries, complicating conservation and utilization efforts. In this study, we employed transcriptomes from a representative clade within the subtribe to construct a low-copy nuclear (LCN) gene data set. Plastid genomes and LCN genes, assembled from 66 samples, were used to investigate the phylogenetic structure, reticulate evolution and divergence times among the species of this subtribe. Firstly, phylogenetic analysis revealed that Boeica is polyphyletic and identified a new genus, Crassicaulis, which forms a sister group to the remaining genera within the subtribe. Secondly, complex cytonuclear conflicts and gene tree incongruence at genus-level nodes were identified. Multiple lines of evidence revealed two reticulate evolutionary events within this lineage, suggesting that Boeica porosa and B. stolonifera, as well as Boeica enpingensis, underwent hybridization during their speciation processes. Finally, divergence time estimation revealed that most genera emerged between 17 and 12 Ma. This study provides a well-resolved phylogenetic framework for the subtribe Leptoboeinae, describes a new genus and elucidates the subtribe's intricate reticulate evolutionary history. Furthermore, we propose that the mid-Miocene East Asian monsoon played a pivotal role in the diversification of this lineage.

Crassicaulis guiliangii Lei Cai & F.M.Yang, sp. nov.
(a) Habitat. (b) Stem showing petiole and peduncle. (c) Adaxial leaf surface. (d)Abaxial leaf surface. (e–g) Inflorescence. (h) Infructescence. (i) Front view of flower. (j) Opened corolla and pistil. (k) Opened corolla and pistilwith calyx. (l) Opened young fruit. 

Crassicaulis Lei Cai & Mich.Möller gen. nov.

Diagnosis: Crassicaulis Lei Cai & Mich.Möller most resembles Boeica C.B.Clarke and Leptoboea Benth. according to the morphological evidence but can easily be distinguished from Boeica by its opposite leaves, and a corolla tube that is slightly longer than the limb, from Leptoboea by the habit of its species (subshrubs without woodiness), and the 20–35 flowers on each inflorescence, and from both by the pedicel, calyx and corolla all being glandular-pubescent, the two ridges at the lower part of the corolla throat and the thicker stem.

Etymology: The genus name “Crassicaulis” was chosen to reflect the relatively thick stems, a rare character in the Gesneriaceae, of the only known species ofthis genus. The Chinese name is 粗茎苣苔属. 

Type species: Crassicaulis guiliangii Lei Cai & F.M.Yang. 



Fengmao Yang, Shaojun Ling, Ruxuan Yang, Fang Wen, Wei Gu, Xiangzhou Hu, Liewen Lin, Yizhi Wang, Jie Cai, Mingxun Ren, Michael Möller and Lei Cai. 2025. Phylogenomic Reconstruction reveals deep reticulate Evolutionary History and Polyphyletic Genus Boeica in the subtribe Leptoboeinae (Gesneriaceae), with description of A Novel Genus. Cladistics. DOI: doi.org/10.1111/cla.70010 [08 October 2025]