Wednesday, April 28, 2021

[Herpetology • 2021] Pedioplanis branchi & P. mayeri Lizards of A Different Stripe: Phylogenetics of the Pedioplanis undata Species Complex (Squamata, Lacertidae), with the Description of Two New Species


Pedioplanis branchi & Pedioplanis mayeri  
Childers, Kirchhof & Bauer, 2021

   DOI: 10.3897/zse.97.61351  

Abstract
The lacertid genus Pedioplanis is a moderately speciose group of small-bodied, cryptically-colored lizards found in arid habitats throughout southern Africa. Previous phylogenetic work on Pedioplanis has determined its placement within the broader context of the Lacertidae, but interspecific relations within the genus remain unsettled, particularly within the P. undata species complex, a group largely endemic to Namibia. We greatly expanded taxon sampling for members of the P. undata complex and other Pedioplanis, and generated molecular sequence data from 1,937 bp of mtDNA (ND2 and cyt b) and 2,015 bp of nDNA (KIF24, PRLR, RAG-1) which were combined with sequences from GenBank resulting in a final dataset of 455 individuals. Both maximum likelihood and Bayesian analyses recover similar phylogenetic results and reveal the polyphyly of P. undata and P. inornata as presently construed. We confirm that P. husabensis is sister to the group comprising the P. undata complex plus the Angolan sister species P. huntleyi + P. haackei and demonstrate that P. benguelensis lies outside of this clade in its entirety. The complex itself comprises six species including P. undata, P. inornata, P. rubens, P. gaerdesi and two previously undescribed entities. Based on divergence date estimates, the P. undata species complex began diversifying in the late Miocene (5.3 ± 1.6 MYA) with the most recent cladogenetic events dating to the Pliocene (2.6 ± 1.0 MYA), making this assemblage relatively young compared to the genus Pedioplanis as a whole, the origin of which dates back to the mid-Miocene (13.5 ± 1.8 MYA). Using an integrative approach, we here describe Pedioplanis branchi sp. nov. and Pedioplanis mayeri sp. nov. representing northern populations previously assigned to P. inornata and P. undata, respectively. These entities were first flagged as possible new species by Berger-Dell’mour and Mayer over thirty years ago but were never formally described. The new species are supported chiefly by differences in coloration and by unique amino acid substitutions. We provide comprehensive maps depicting historical records based on museum specimens plus new records from this study for all members of the P. undata complex and P. husabensis. We suggest that climatic oscillations of the Upper Miocene and Pliocene-Pleistocene era in concert with the formation of biogeographic barriers have led to population isolation, gene flow restrictions and ultimately cladogenesis in the P. undata complex.

Key Words: Biogeography, molecular phylogeny, phylogenetics, southern Africa, species description, taxonomy


Figure 8. Life photographs of representative individuals of  Pedioplanis branchi sp. nov. highlighting color pattern variation within the species.
 (a.) Lateral and (b.) dorsal whole body images of an adult specimen from the Chuos Mountains (Chuosberg) (SK376.2014; not included in study), note the dense, dark speckling on the dorsum, and bold dark lateral markings.
(c.) Dorsal and (d.) lateral whole body images of an adult specimen (SK402.2014; not included in study) from the northward extension of the Swakop River Canyon, note the more uniformly gray and red dorsum lacking speckling and fainter yellow spots along the flanks. Lateral
 (e.) head and (f.) whole body images of an adult specimen from the northward extension of the Swakop River Canyon; note the black, vertical bar beneath the lower eyelid, the bold, dark lateral markings on the body, and the distinct longitudinal row of yellow spots along the flanks.

Pedioplanis inornata “South”/P. inornata “Central”
The type series of Eremias inornata Roux, 1907 comprises eight specimens collected from “Oranje-Fluß, Kl.-Namaqualand” [the Orange River, Little Namaqualand, Northern Cape, Province, South Africa]. Syntype ZMA11049 (Zoological Museum Amsterdam) was subsequently designated as the lectotype (Daan and Hillenius 1966). The ZMA collections have subsequently been incorporated into those of the Naturalis Biodiversity Center in Leiden (RMNH). The geographic origin of the specimens and the relatively detailed description and accompanying plate, clearly tie the name-bearing lectotype of Pedioplanis inornata to the P. inornata “South” clade. No other nomina are currently within the synonymy of Pedioplanis inornata and none are available for application to the P. inornata “Central” clade, which is here described as:

 Pedioplanis branchi sp. nov.  

Etymology: The specific epithet is a patronym formed in the genitive singular honoring our friend and colleague, the British-born South African herpetologist, William Roy Branch (1946–2018), in recognition of his many contributions to African herpetology and in remembrance of many happy trips in the field together.

Distribution: Pedioplanis branchi sp. nov. is endemic to the Erongo Region in Namibia. Its range stretches from just south of the Swakop River in the South, where it occurs in parapatry with P. husabensis, through the pro-Namib, to the Ugab River and the Brandberg in the north and Mount Erongo and Otjimbingwe in the east, probably occurring in parapatry with P. mayeri all along its northeastern border (see Fig. 6 for map of locality records).

Figure 9. Habitat of Pedioplanis branchi sp. nov. 
 (a.) Collection site for ZMB 89310 (Farm Friedhelm Sack, Erongo Region, Namibia) from the extended Swakop River Canyon on a marble/calc silicate slope with sparse grass cover and isolated shrubs. (b.) Collection site for ZMB 89612 (not included in study) from a small hill slope in the Tsiseb conservancy in the Pro-Namib, 20 km south of the Brandberg (visible in the background) depicting a sparsely vegetated scree slope with a Commiphora shrub.



Figure 4. Life photographs of representative individuals of Pedioplanis mayeri sp. nov. highlighting color pattern variation within the species.
(a.) Dorsal and (b.) lateral whole body images of an adult possessing bold dorsal stripes collected at the type locality (Farm Omandumba, Erongo Region, Namibia), note the row of yellow spots along the flanks;
 (c.) Dorsal image of an adult from the Kamanjab area depicting fainter, medium-brown dorsal stripes; (d.) An adult female collected from Gobabis (ZMB 80391; see also Fig. 5a) with dorsal striping of varying boldness and a more grayish-brown hindbody compared to the more reddish hindbody observed in other individuals.

Pedioplanis undata “South”/P. undata “North”
Mayer and Böhme (2000) examined the type material of Lacerta undata Smith, 1838 and noted that the rediscovered syntype specimens in the National Museums of Scotland collection were, in fact, representatives of the taxon long associated with the name Pedioplanis lineoocellata pulchella (Gray, 1845) and now, based on the findings of Edwards (2013), considered as P. lineoocellata (Duméril & Bibron, 1839). They proposed to conserve the current usage of names within Pedioplanis by calling on the ICZN in Case 3085 to set aside the original type designation and recognize the designation of a neotype for L. undata. Opinion 1992 of the ICZN (Anonymous 2002) accepted this solution and thus the neotype was fixed as Naturhistorisches Museum Wien (NMW) 31886 from “near Windhoek, Namibia.” This links the name P. undata to the P. undata “South” clade. The assignment of the name Pedioplanis undata to the more restricted, southern clade is notable in that the predominant concept of the species based on previous studies of P. undata is largely affiliated with populations and representative specimens from the more broadly distributed northern clade (Branch 1998; Makokha et al. 2007; Conradie et al. 2012). In these cases the presence of bold dorsal stripes was considered diagnostic for the species, however based on our results this character is now largely applicable to the unnamed northern clade, and is exhibited inconsistently and with variation among true P. undata. No other nomina are currently within the synonymy of Pedioplanis undata and none are available for application to the P. undata “North” clade, which we describe as:

Pedioplanis mayeri sp. nov. 

Etymology: The specific epithet is a patronym formed in the genitive singular honoring our friend and colleague, the Austrian lacertid specialist Werner Mayer (1943–2015), who first recognized the distinctiveness of his namesake species and whose contributions to the study of Pedioplanis have been seminal.

Distribution: Pedioplanis mayeri sp. nov. is endemic to northern Namibia and occurs from south of the Kunene River and east of the Namib Desert along the eastern side of the escarpment, thence throughout the eastern Kunene Region, entering the northeastern parts of the Erongo Region and east through the Otjozondjupa Region, reaching at least as far east as Oshikango (TM17028) in the north, Gobabis (Omaheke Region) in the south-east, and Nauchas in the south. It does not enter the Kalahari dune fields, and is possibly absent from the Khomas Hochland, where it is replaced by P. undata (see Fig. 6 for map of locality records).


Figure 5. Habitat of Pedioplanis mayeri sp. nov.  
(a.) Collection site near Gobabis for ZMB 80389–80392 in open savannah woodland, with tall, dense grasses and introduced Opuntia. (b.) Collection site for ZMB 89350 (29 km N of Palmwag, Kunene Region, Namibia) in stony Pro-Namib habitat with sparse vegetation dominated by Euphorbia damarana (center).

    

Jackie L. Childers, Sebastian Kirchhof and Aaron M. Bauer. 2021. Lizards of A Different Stripe: Phylogenetics of the Pedioplanis undata Species Complex (Squamata, Lacertidae), with the Description of Two New Species. Zoosystematics and Evolution. 97(1): 249-272.  DOI: 10.3897/zse.97.61351  


Tuesday, April 27, 2021

[Botany • 2021] Elatostema qinzhouense (Urticaceae) • A New Species from Limestone Karst in Guangxi, China


Elatostema qinzhouense L.F. Fu, A.K. Monro & Y.G. Wei

in Fu, Monro, Yang, ... et Wei, 2021. 
钦州楼梯草  ||  DOI: 10.7717/peerj.11148

Abstract 
Elatostema qinzhouense L.F. Fu, A.K. Monro & Y.G. Wei, a new species from Guangxi, China is described and illustrated. Morphologically, E. qinzhouense is most similar to E. hezhouense from which it differs by having smaller size of leaf laminae, fewer and smaller staminate peduncle bracts, longer pistillate peduncle bracts and a larger achene. This result is supported by the molecular evidence. The phylogenetic position of the new species within Elatostema is evaluated using three DNA regions, ITS, trnH-psbA and psbM-trnD, for 107 taxa of Elatostema s.l. (including E. qinzhouense). Bayesian inference (BI) and maximum likelihood (ML) analyses each recovered the same strongly supported tree topologies, indicating that E. qinzhouense is a member of the core Elatostema clade and sister to E. hezhouense. Along with the phylogenetic studies, plastid genome and ribosomal DNA (rDNA) sequences of the new species are assembled and annotated. The plastid genome is 150,398 bp in length and comprises two inverted repeats (IRs) of 24,688 bp separated by a large single-copy of 83,919 bp and a small single-copy of 17,103 bp. A total of 113 functional genes are recovered, comprising 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. The rDNA is 5,804 bp in length and comprised the 18S ribosomal RNA partial sequence (1,809 bp), internal transcribed spacer 1 (213 bp), 5.8S ribosomal RNA (164 bp), internal transcribed spacer 2 (248 bp) and 26S ribosomal RNA partial sequence (3,370 bp). In addition, the chromosome number of E. qinzhouense is observed to be 2n = 26, suggesting that the species is diploid. Given a consistent relationship between ploidy level and reproductive system in Elatostema, the new species is also considered to be sexually reproducing. Our assessment of the extinction threat for E. qinzhouense is that it is Endangered (EN) according to the criteria of the International Union for Conservation of Nature.


Illustration of Elatostema qinzhouense L.F. Fu, A.K. Monro & Y.G. Wei.
 (A) Habit; (B) staminate and pistillate inflorescences at subsequent nodes of monoecious stem; (C) stipule and furfuraceous stem; (D) leaves; (E) staminate inflorescence viewed from below showing involucre bracts; (F) staminate flower; (G) pistillate inflorescence viewed from below showing involucre bracts; (H) achene.
Illustration by Juliet Beentje.

Plate of Elatostema qinzhouense L.F. Fu, A.K. Monro & Y.G. Wei.
 (A) Habitat; (B) habit; (C) leave base and stipule; (D) staminate inflorescence; (E) staminate flower; (F) pistillate inflorescence.
 Photos by Long-Fei Fu & Bo Pan.

Elatostema qinzhouense L.F. Fu, A.K. Monro & Y.G. Wei, sp. nov.

Diagnosis. Most similar to Elatostema hezhouense from which it differs by the smaller size of leaf laminae (10–45 × 6–15 mm vs. 55–115 × 20–25 mm), fewer and smaller staminate peduncle bracts (1, 1 mm vs. 2, 3.5 mm), longer pistillate peduncle bract (0.900 mm vs. 0.375 mm) and a larger achene (0.86–0.94 × 0.27–0.30 mm vs. 0.6 × 0.25 mm) (see Table 4).



Distribution and habitat. Elatostema qinzhouense is known from a single locality in Lingshan County, Qinzhou City, Guangxi, China. E. qinzhouense is likely calcicolous and grows under evergreen broad-leaved forest on limestone hills. Flowering from December to March, fruiting from March to April.

Etymology. Elatostema qinzhouense is named after the type locality, Qinzhou City, Guangxi Zhuang Autonomous Region, China.

Vernacular name. 钦州楼梯草 (Chinese name).

 
Longfei Fu, Alexandre K. Monro, Tiange Yang, Fang Wen, Bo Pan, Zibing Xin, Zhixiang Zhang​ and Yigang Wei. 2021. Elatostema qinzhouense (Urticaceae), A New Species from Limestone Karst in Guangxi, China. PeerJ. 9:e11148 . DOI: 10.7717/peerj.11148


[Herpetology • 2021] Night Stalkers from Above: A Monograph of Toxicodryas Tree Snakes (Squamata: Colubridae) with Descriptions of Two New Cryptic Species from Central Africa



Toxicodryas adamanteus  

in Greenbaum, Allen, Vaughan, ... et Brown, 2021. 
 
Abstract
The genus Toxicodryas, historically included with the renowned Australasian cat-eyed snakes of the colubrid genus Boiga, currently includes two widespread species (T. blandingii and T. pulverulenta) in western, central, and eastern Africa. We leverage findings from a recent phylogenomic and historical demographic analysis of this genus (based on 2848–4471 Rad-seq loci from across the genome), with robust sampling from throughout the ranges of both species, to define two additional taxonomic units, with species boundaries corresponding to river barriers. Additional morphometric data from scores of examined museum specimens and literature records bolster the recognition of these two new cryptic species. We hypothesize that T. blandingii occurs west of the confluence of the Congo and Ubangi rivers, whereas a cryptic new species that is found east of this biogeographic barrier has significantly higher numbers of ventral scale counts in both sexes, additional significant differences in several scale counts, and lower venom toxicity. Toxicodryas pulverulenta occurs west of the Niger Delta in West Africa, whereas a cryptic new species that is found east of this biogeographic barrier has significantly higher numbers of subcaudal scale counts in both sexes. A review of published information regarding morphological variation, ecology, natural history, habitat, and venom is summarized for these four Toxicodryas species.

Keywords: Reptilia, Congo Basin, arboreal, cryptic species, rivers, taxonomy



Toxicodryas adamanteus sp. nov. in life.
 adult female (UTEP 22205) from Salonga National Park, Democratic Republic of the Congo.
Photo: E. Greenbaum

Toxicodryas adamanteus sp. nov.

Etymology. The specific epithet adamanteus is a Latin adjective referring to the diamond-shaped marks on the flanks and dorsum of this species.

Toxicodryas vexator sp. nov. (field no. CRT 3890) from Kona, Democratic Republic of the Congo (DRC), showing everted hemipenis in ventrolateral view.
Photo: Z. Nagy

Toxicodryas vexator sp. nov.

Etymology. The specific epithet is a noun in apposition, invariable, from the Latin noun vexator, meaning harasser or stalker, in reference to the fact that this snake stalks prey when they are sleeping, and to its aggressiveness when disturbed.


Eli Greenbaum, Kaitlin E. Allen, Eugene R. Vaughan, Olivier S. G. Pauwels, Van Wallach, Chifundera Kusamba, Wandege M. Muninga, Mwenebatu M. Aristote, Franck M. M. Mali, Gabriel Badjedjea, Johannes Penner, Mark-Oliver Rödel, Jacqueline Rivera, Viktoria Sterkhova, Grant Johnson, Walter P. Tapondjou N. and Rafe M. Brown. 2021. Night Stalkers from Above: A Monograph of Toxicodryas Tree Snakes (Squamata: Colubridae) with Descriptions of Two New Cryptic Species from Central Africa. Zootaxa. 4965(1); 1–44. DOI: 10.11646/zootaxa.4965.1.1


[Invertebrate • 2021] Grimpoteuthis imperator Emperor Dumbo from the Emperor Seamounts, North Pacific: Holistic Description of New Deep Sea Megafauna (Cephalopoda: Cirrata) using A Minimally Invasive Approach


Grimpoteuthis imperator
Ziegler & Sagorny, 2021

天皇ダンボ || DOI: 10.1186/s12915-021-01000-9
 
Abstract
Background: 
In zoology, species descriptions conventionally rely on invasive morphological techniques, frequently leading to damage of the specimens and thus only a partial understanding of their structural complexity. More recently, non-destructive imaging techniques have successfully been used to describe smaller fauna, but this approach has so far not been applied to identify or describe larger animal species. Here, we present a combination of entirely non-invasive as well as minimally invasive methods that permit taxonomic descriptions of large zoological specimens in a more comprehensive manner.

Results: 
Using the single available representative of an allegedly novel species of deep-sea cephalopod (Mollusca: Cephalopoda), digital photography, standardized external measurements, high-field magnetic resonance imaging, micro-computed tomography, and DNA barcoding were combined to gather all morphological and molecular characters relevant for a full species description. The results show that this specimen belongs to the cirrate octopod (Octopoda: Cirrata) genus Grimpoteuthis Robson, 1932. Based on the number of suckers, position of web nodules, cirrus length, presence of a radula, and various shell characters, the specimen is designated as the holotype of a new species of dumbo octopus, Grimpoteuthis imperator sp. nov. The digital nature of the acquired data permits a seamless online deposition of raw as well as derived morphological and molecular datasets in publicly accessible repositories.

Conclusions: 
Using high-resolution, non-invasive imaging systems intended for the analysis of larger biological objects, all external as well as internal morphological character states relevant for the identification of a new megafaunal species were obtained. Potentially harmful effects on this unique deep-sea cephalopod specimen were avoided by scanning the fixed animal without admixture of a contrast agent. Additional support for the taxonomic placement of the new dumbo octopus species was obtained through DNA barcoding, further underlining the importance of combining morphological and molecular datasets for a holistic description of zoological specimens.

Keywords: Magnetic resonance imaging, Micro-computed tomography, Three-dimensional, Modelling, Taxonomy, Cephalopod, Cirrate, Dumbo




Grimpoteuthis imperator sp. nov. ZMB MOLL 240160.
 a–c Habitus before fixation showing dorsal, ventral, and oral views, anterior facing up. d, e Specimen prior to MRI following several months in 10% formalin solution showing dorsal and ventral views, anterior facing up. Stippled frame denotes the MRI region of interest. f Virtual section through the 3D MRI dataset, anterior facing right. The asterisk denotes a susceptibility artefact in the buccal mass area caused by ingested sediment. g Virtual section through the central long axis of the funnel. h Section of an arm showing the suckers and cirri, right lateral view. i Volume rendering of the viscera, ventral view, anterior facing up. j Close-up of the left gill showing eight broad lamellae. k Volume rendering of the viscera, oblique posterior view


Family Grimpoteuthidae O’Shea, 1999

Genus Grimpoteuthis Robson, 1932

Type species: Cirroteuthis umbellata Fischer, 1883: 404. 
By original designation, Robson 1932: 137.

Grimpoteuthis imperator sp. nov.

Diagnosis: Medium-sized species with moderately long, lateral fins. Cirri short and suckers moderate. Gills compact with eight broad lamellae. Radula present, teeth homodont. Paired anterior and unpaired posterior salivary glands present. Shell U-shaped, smooth with lateral wings parallel, broadly tapering towards distal ends.

Distribution: So far known only from the type locality in the northern part of the Emperor Seamounts, an undersea mountain chain in the northwestern part of the North Pacific.

Etymology: Latin, imperator, noun in apposition. Named after the Emperor Seamounts to which the type locality belongs. 
Proposed vernacular names are Emperor Dumbo (English), Dumbo impérial (French), 天皇ダンボ (Japanese), and Kaiserdumbo (German).


Conclusions: 
By extending the morphomics concept to the description of a new species of megafauna, we here show that a minimally invasive approach based on the application of complementary non-invasive 3D imaging techniques supplemented with molecular sequence data can help to advance metazoan taxonomy, in particular, in cases where valuable, larger zoological specimens require a more detailed, holistic analysis.


  
Alexander Ziegler and Christina Sagorny. 2021. Holistic Description of New Deep Sea Megafauna (Cephalopoda: Cirrata) using A Minimally Invasive Approach. BMC Biology. 19: 81. DOI: 10.1186/s12915-021-01000-9
Alan J. Jamieson and Michael Vecchione. 2020. First in situ observation of Cephalopoda at hadal depths (Octopoda: Opisthoteuthidae: Grimpoteuthis sp.). Marine Biology. 167, 82. DOI  10.1007/s00227-020-03701-1 Open Access
Footage captured of cephalopod at deepest ocean level ever observed

[Botany • 2021] Saxifraga × klimesii (Saxifragaceae) • A New Natural Hybrid in Saxifraga sect. Porphyrion Tausch from Himalaya


Saxifraga ×klimesii Hajman, Horák & Hroneš

in Horák, Hajman, Hroneš & Pavelka, 2021.

Abstract
A new natural hybrid Saxifraga ×klimesii Hajman, Horák & Hroneš from Ladakh (NW India) is described and illustrated. This hybrid resulted from cross between Saxifraga meeboldii Engler & Irmscher and Saxifraga pulvinaria Harry Smith. The morphology of the hybrid plants and its parental taxa was evaluated using morphometric analysis of both living plants and herbarium specimens. An artificial cross was also made to compare its morphology with spontaneous hybrids. Ploidy level and relative genome size was established using flow cytometry. Saxifraga ×klimesii is intermediate in morphology and relative genome size between both parents. It differs from S. meeboldii by shorter and wider rosette leaves and lighter yellow, larger and wider petals and from S. pulvinaria by larger rosettes, often more than one pore on leaves and usually yellow coloured petals. A lectotype is selected for S. pulvinaria.

Keywords: Alpine flora, hybridisation, Ladakh, taxonomy, typification, Saxifraga



Saxifraga ×klimesii Hajman, Horák & Hroneš
 

David Horák, Martin Hajman, Michal Hroneš and Mojmír Pavelka. 2021. A New Natural Hybrid in Saxifraga sect. Porphyrion Tausch (Saxifragaceae). Phytotaxa. 498(1); 25–34. DOI:  10.11646/phytotaxa.498.1.3

Its parents are Saxifraga meeboldii and Saxifraga pulvinaria. It occurs in Ladakh, Himalaya and it is named in honor of czech botanist Leoš Klimeš who was probably its first observer.

[Ichthyology • 2021] Phylogenomic Resolution of the Monotypic and Enigmatic Amarsipus carlsbergi, the Bagless Glassfish (Teleostei, Amarsipidae)


Amarsipus carlsbergi Haedrich, 1969

in Harrington, Friedman, Miya, et al., 2021. 
 
Abstract
Amarsipus carlsbergi is a rare mesopelagic fish distributed in the Indian and Pacific Oceans and is the only species classified in the family Amarsipidae. Since its description in 1969, phylogenetic hypotheses have varied regarding its relationship with other percomorph lineages, but most have indicated a close relationship with the traditional suborder Stromateoidei. Molecular phylogenies place families previously classified in Stromateoidei within a diverse clade—Pelagiaria—that includes fishes such as tunas, cutlassfishes and pomfrets. A recent analysis of a small number of loci resolved a clade containing Amarsipus and the stromateoid lineage Tetragonurus. A subsequent high‐throughput sequence phylogeny based on ultraconserved elements (UCEs) of Pelagiaria lacked Amarsipus, but revealed both strong support for stromateoid paraphyly and high levels of gene tree incongruence. We gathered UCE sequence data for 610 UCE loci from Amarsipus and integrate these with samples from all remaining pelagiarian families. This provides a taxonomically comprehensive phylogenomic framework to test the evolutionary relationships of Amarsipus, and evaluate the support for stromateoid monophyly. As in previous studies, our analyses find high levels of gene tree topological discordance with regard to some deeper pelagiarian inter‐relationships. However, we resolve Amarsipus as the sister lineage of a clade containing Tetragonurus and a family not considered a stromateoid lineage, Chiasmodontidae. This relationship is supported by both high gene tree concordance and node support. Our analyses also provide strong support for the paraphyly of Stromateoidei, casting uncertainty on previous hypotheses of the evolution of morphological traits across members of Pelagiaria.

Keywords: concordance factors, Pelagiaria, Stromateoidei, ultraconserved elements


Amarsipus carlsbergi, photographed on 7 February 2019, Romblon, Phillipines.
Photograph provided by courtesy of Linda Ianniello

Amarsipus carlsbergi Haedrich, 1969






Richard C. Harrington, Matt Friedman, Masaki Miya, Thomas J. Near and Matthew A. Campbell. 2021. Phylogenomic Resolution of the Monotypic and Enigmatic Amarsipus, the Bagless Glassfish (Teleostei, Amarsipidae). Zoologica Scripta. DOI: 10.1111/zsc.12477

    

Monday, April 26, 2021

[Herpetology • 2021] Rediscovery and Distribution Extension of the Rare Kukri Snake, Oligodon hamptoni Boulenger, 1918 (Serpentes, Colubridae), with the First Record of This Species from China


Oligodon hamptoni Boulenger, 1918

in Lee, Yang, Yushchenko & Poyarkov, 2021. 

Abstract
Oligodon hamptoni is a rare species of Kukri Snake known from only two specimens, both collected nearly a century ago in northern Myanmar. Here, we report the third record of this species based on a photograph taken in Mt. Gaoligongshan, Tengchong City, Yunnan Province, China, approximately 235 km northeast of the nearest record in Bhamo District, Kachin State, Myanmar. We also provide a detailed redescription of the holotype, showing that the photo record from Mt. Gaoligongshan can be unambiguously identified to this species. This rediscovery represents the first observation of O. hamptoni in China and is the first report of this species in almost 100 years.

Key Words: biodiversity, Gaoligongshan Nature Reserve, morphology, Myanmar, snakes, Squamata

Figure 4. Morphological comparison of the holotype specimen of Oligodon hamptoni (NHMUK 1946.1.1.71) with the newly recorded specimen from Baoshan, Yunnan Province, China.
 (A) Lateral and (B) dorsal aspects of the holotype specimen of Oligodon hamptoni (NHMUK 1946.1.1.71) from the original description (Boulenger, 1918);
(C) dorsolateral aspect of the holotype specimen of Oligodon hamptoni (NHMUK 1946.1.1.71), photograph by Justin L. Lee; and
(D) dorsolateral aspect of the Tengchong specimen (not collected), photograph by Zhuan-Yun Hu.

Figure 3. Natural habitat (A) and a photo record (B) of Oligodon hamptoni in Tengchong City, Yunnan Province, China.
Photographs by Zhuan-Yun Hu.

Oligodon hamptoni Boulenger, 1918


 Justin L. Lee, Jian-Huan Yang, Platon Yushchenko and Nikolay A. Poyarkov Jr. 2021. Rediscovery and Distribution Extension of the Rare Kukri Snake, Oligodon hamptoni Boulenger, 1918 (Reptilia, Serpentes, Colubridae), with the First Record of This Species from China. Herpetozoa. 34: 13-21. DOI: 10.3897/herpetozoa.34.e60875


[Botany • 2021] Lycoris wulingensis (Amaryllidaceae) • A Dwarf New Species from Hunan, China


Lycoris wulingensis S.Y. Zhang 

in Zhang, Huang, Zhang, ... et Shao, 2021. 
武陵石蒜 || DOI: 10.3897/phytokeys.177.62741

Abstract
Lycoris wulingensis S.Y. Zhang, a new species from Hunan Province (central South China), is described and illustrated. This new species is a fertile diploid plant and its karyotype is 2n = 22. It is most similar to L. × haywardii in morphology, but the latter is a hybrid species and distributed in East China and the plant is much larger. Amongst the original species, L. wulingensis is similar to L. radiata, but differs from it in its flowers being rose-red (vs. red) and stamens and tepals are nearly the same length (vs. stamens significantly longer than tepals).

Keywords: Amaryllidaceae, China, Lycoris wulingensis, morphology, taxonomy


 Figure 2. Morphology of Lycoris wulingensis S. Y. Zhang, sp. nov.
 A plant B inflorescence C flower bud D flower E fruit F seed.
The picture was drawn by Ling Wang.

Figure 1. Morphology of Lycoris wulingensis S. Y. Zhang, sp. nov.
A inflorescence B, C habitat D flower E flower bud F leaf G fruit H seeds I bulb J karyotype (2n = 22) K pollen (stained by TTC).



Lycoris wulingensis S.Y. Zhang, sp. nov.
  
Diagnosis: Most similar to L. × haywardii, but differs from it by smaller plant and flower sizes (Figs 3, 4, Table 2) and it is restricted to north-western Hunan Province (Fig. 5).

Distribution: Lycoris wulingensis is distributed in the east of Wuling Mountains and its surrounding areas, such as Cili, Linli, Li, Taoyuan and Yongding Counties (Fig. 5).

Habitat: Lycoris wulingensis is partial to grow on the edge of forest roads, farmland or riverside beaches, usually under deciduous trees (such as Alangium chinense and Pterocarya stenoptera) and accompanied by Pinellia ternata, Commelina communis, Arthraxon hispidus and Ophiopogon bodinieri etc. The surrounding residents sometimes cultivate it as an ornamental plant.


Etymology: The specific epithet comes from its distribution area of the Wuling Mountains, which is an important biodiversity hotspot in South Central China.

Vernacular name: 武陵石蒜 [wǔ líng shí suàn].


 Si-Yu Zhang, Ying Huang, Pei Zhang, Ke-Run Zhu, Yong-Bing Chen and Jian-Wen Shao. 2021. Lycoris wulingensis, A Dwarf New Species of Amaryllidaceae from Hunan, China. PhytoKeys. 177: 1-9. DOI: 10.3897/phytokeys.177.62741

Sunday, April 25, 2021

[Paleontology • 2021] Adocus kohaku • A New Species of Aquatic Turtle (Testudines: Cryptodira: Adocidae) from the Late Cretaceous of Kuji, Iwate Prefecture, Northeast Japan, with Special References to the Geological Age of the Tamagawa Formation (Kuji Group)


 Adocus kohaku
Hirayama, Sonoda, Uno, Horie, Tsutsumi, Sasaki, Mitsuzuka & Takisawa, 2021

Illustration: Oda Takashi facebook.com/studiocorvo 

Abstract 
A nearly complete shell of the genus Adocus (Adocidae; Pan-Trionychia; Cryptodira; Testudines) was collected from the late Cretaceous (Turonian) Tamagawa Formation of Kuji Group at Kuji City, Iwate Prefecture, northeast Japan. This turtle shows unique features such as the loss of cervical scute, extreme expansion of marginal scutes overlying costal plates, and exclusion of the humeral- pectoral sulcus from entoplastron. Thus,  Adocus kohaku is erected as a new species. As A. kohaku shows most derived position of A. kohaku within this genus, morphological diversity of the genus Adocus seems to have occurred rather early in its evolution in Eastern Asia. 

Keywords: Adocus kohaku sp. nov.; Cretaceous; Kuji Group; Reptilia; Testudines; U-Pb Dating

Systematic Paleontology
Testudines Batsch, 1788
Cryptodira Cope, 1868
Pan-Trionychia Hummel, 1929
Adocidae Cope, 1870

Type Genus. Adocus Cope, 1868
Known Distribution. Early Cretaceous to Eocene of Asia and Late Cretaceous to Paleocene of North America.

Genus Adocus Cope, 1868 
Type Species. Adocus beatus (Leidy, 1865) 

Known Distribution. Early Cretaceous to Eocene of Asia and Late Cretaceous to Paleocene of North America. 

: Turtle shell of  Adocus kohaku sp. nov., holotype, KAM 01.
A, carapace in dorsal view; B, plastron in ventral view; C, plastron in dorsal view. Red lines show scute sulci on shell surface.

Adocus kohaku, New Species

Diagnosis. Adocus with cervical scute completely lost; fifth to tenth marginal scutes medially enlarged, overlying at least distal half of second to seventh costal plates; three pairs of inframarginals. 

Etymology. Named after Japanese name of amber as this fossil was associated with numerous ambers. 

    

Conclusion: 
A nearly complete shell of the genus Adocus (Adocidae; Trionychia; Cryptodira; Testudines) was collected from the late Cretaceous (Turonian) Tamagawa Formation of Kuji Group at Kuji city, Iwate Prefecture, northeast Japan. This turtle shows unique features such as the loss of cervical scute, extreme expansion of marginal scutes overlying costal plates, exclusion of the humero-pectoral sulcus from entoplastron, and three pairs of inframarginals. Thus, A. kohaku is proposed as a new species. Additional remains of A. kohaku suggest this species had carapace length of at least a 60 cm long, the largest among Adocus in Asia. As A. kohaku is a derived taxon within this genus, its occurrence in the early Late Cretaceous suggests early development of morphological diversifications within this genus, as previously proposed for the Nanhsiungchelyidae. Occurrences of both most basal (A. sengokuensis) and most derived (A. kohaku) taxa from Japan implies eastern Asia was the center of diversification of this clade. 


Ren Hirayama, Teppei Sonoda, Hikaru Uno, Kenji Horie, Yukiyasu Tsutsumi, Kazuhisa Sasaki, Shunsuke Mitsuzuka and Toshio Takisawa. 2021. Adocus kohaku, A New Species of Aquatic Turtle (Testudines: Cryptodira: Adocidae) from the Late Cretaceous of Kuji, Iwate Prefecture, Northeast Japan, with Special References to the Geological Age of the Tamagawa Formation (Kuji Group). International Journal of Paleobiology & Paleontology. medwinpublishers.com/IJPBP