Tuesday, November 4, 2014

[Mammalogy • 2014] Phylogenetic Relationships in the Niviventer-Chiromyscus complex (Rodentia, Muridae) inferred from Molecular Data, with Description of A New Species from Vietnam



 Thomas' Masked Tree Rat | Chiromyscus thomasi
Balakirev, Abramov & Rozhnov, 2014

Abstract
Based on molecular data for mitochondrial (Cyt b, COI) and nuclear (IRBP, GHR) genes, and morphological examinations of museum specimens, we examined diversity, species boundaries, and relationships within and between the murine genera Chiromyscus and Niviventer. Phylogenetic patterns recovered demonstrate that Niviventer sensu lato is not monophyletic but instead includes Chiromyscus chiropus, the only previously recognized species of Chiropus. To maintain the genera Niviventer and Chiropus as monophyletic lineages, the scope and definition of the genus Chiromyscus is revised to include at least three distinct species: Chiromyscus chiropus (the type species of Chiromyscus), C. langbianis (previously regarded as a species of Niviventer), and a new species, described in this paper under the name C. thomasi sp. n.

Keywords: White-bellied rats, Fea’s tree rat, Southeast Asia, Vietnam, molecular phylogeny, taxonomy, new species


The paratype of Chiromyscus thomasi sp. n., Son La Province, northern Vietnam,
specimen ZIN 101651, genetic voucher MC80.
  A Lateral view B Dorsal view C Ventral view D Head, face view E Head, lateral view F Hallux of the hind foot with the nail.

Alexander Balakirev, Alexei Abramov and Viatcheslav Rozhnov. 2014. Phylogenetic Relationships in the Niviventer-Chiromyscus complex (Rodentia, Muridae) inferred from Molecular Data, with Description of A New Species. ZooKeys. 451: 109–136. doi: dx.doi.org/10.3897/zookeys.451.7210

Sunday, November 2, 2014

[Herpetology • 2014] Insights from Ecological Niche Modeling on the Taxonomic Distinction and Niche Differentiation between the Black-spotted and Red-spotted Tokay Geckoes (Gekko gecko)


Figure 2. (A) Species sample localities for the black-spotted tokay and the red-spotted tokay, respectively. Blue circles represent the black-spotted tokay, while pink triangles represent the red-spotted tokay. (B) and (C) predicted potential niches of the black-spotted tokay and the red-spotted tokay as generated in MaxEnt, respectively.

Figure 1. Body size and spots differences between the black- and the red-spotted tokay. The “black” form has a small body size and dark skin with sundry spots. In contrast, the “red” form has a larger body size and marked red spots.


Abstract
The black-spotted tokay and the red-spotted tokay are morphologically distinct and have largely allopatric distributions. The black-spotted tokay is characterized by a small body size and dark skin with sundry spots, while the red-spotted tokay has a relatively large body size and red spots. Based on morphological, karyotypic, genetic, and distribution differences, recent studies suggested their species status; however, their classifications remain controversial, and additional data such as ecological niches are necessary to establish firm hypotheses regarding their taxonomic status. We reconstructed their ecological niches models using climatic and geographic data. We then performed niche similarity tests (niche identity and background tests) and point-based analyses to explore whether ecological differentiation has occurred, and whether such differences are sufficient to explain the maintenance of their separate segments of environmental ranges. We found that both niche models of the black- and the red-spotted tokay had a good fit and a robust performance, as indicated by the high area under the curve (AUC) values (“black” = 0.982, SD = ± 0.002, “red” = 0.966 ± 0.02). Significant ecological differentiation across the entire geographic range was found, indicating that the involvement of ecological differentiation is important for species differentiation. Divergence along the environmental axes is highly associated with climatic conditions, with isothermality being important for the “black” form, while temperature seasonality, precipitation of warmest quarter, and annual temperature range together being important for the “red” form. These factors are likely important factors in niche differentiation between the two forms, which result in morphological replacement. Overall, beside morphological and genetic differentiation information, our results contribute to additional insights into taxonomic distinction and niche differentiation between the black- and the red-spotted tokay.

Keywords: Climate; ecological speciation; Gekko gecko; Gekko reevesii; MaxEnt; niche divergence; taxonomy



Conclusions
To conclude, our results revealed that niche differentiation between the black- and red-spotted tokay was significantly detected. Such ecological niche divergence occurring in allopatry has often been inferred to, or at least in line with, the ecological speciation hypothesis (Schluter 2000; Rundle and Nosil 2005; Wellenreuther et al. 2012). Our results imply that it is important to quantify niche differences across geographic scales, aiding to define cryptic species. In other words, our results further supported taxonomic suggestions of Rösler et al. (2011), that is, the “black” form and “red” form were taxonomically distinct, which the “red” form is G. g. gecko, while the “black” form is regarded as G. reevesii. Our results also suggested that divergence in physiological temperature and precipitation was the most likely factors that can explain their different distributions. It could be a major driver of the range limits and niche divergence across the entire range. However, caution should be taken to infer the niche divergence, and more mechanistic and experimental studies of individuals are required in the field or in the laboratory (e.g., comprehensive geographic sampling and a functional characterization of differences in resource use; Losos 2000; Wellenreuther et al. 2012).


Yueyun Zhang, Chongtao Chen, Li Li, Chengjian Zhao, Weicai Chen andYong Huang. 2014. Insights from Ecological Niche Modeling on the Taxonomic Distinction and Niche Differentiation between the Black-spotted and Red-spotted Tokay Geckoes (Gekko gecko). Ecology and Evolution. 4(17); 3383–3394. DOI: 10.1002/ece3.1183

Saturday, November 1, 2014

[Ornithology • 2014] Bills as Daggers? A Test for Sexually Dimorphic Weapons in A Lekking Hummingbird


Long-billed Hermit Phaethornis longirostris in flight, at Cope Wildlife, Guapiles, Costa Rica.
Photo: Chris Jimenez | doi: 10.1093/beheco/aru182today.uconn.edu

Abstract
One way in which secondary sexual traits can influence differential reproductive success is by playing a key role in the outcome of direct physical contests for mates. Here we describe an undocumented trait in a species of hummingbird with a lek mating system, the Long-billed hermit (LBH, Phaethornis longirostris). The trait under consideration is a dagger-like structure at the bill tip, which we hypothesize is a secondary sexual trait that functions as a sexually dimorphic weapon. We tested our hypothesis by examining 5 leks during 4 consecutive years, and by employing morphological analyses, performance experiments, and behavioral observations. We found that 1) adult male bill tips were longer and pointier than their counterparts in females and juvenile males, 2) juvenile males acquired dagger-like tips during their transition to adulthood, 3) variation in bill tip morphology reflected puncture capability, and 4) males with larger and pointier bill tips were more successful in achieving lek territory tenure. Our study provides the first evidence of sexually dimorphic weapons in bird bills and stands as one of the few examples of male weaponry in birds. Our results suggest a role of sexual selection on the evolution of overall bill morphology, an alternative hypothesis to the prevailing “ecological causation” explanation for bill sexual dimorphism in hummingbirds.

Key words: animal weaponry, bill morphology, ecological causation, intrasexual competition, male combat, secondary sexual traits, sexual dimorphism, trochilidae.



Alejandro Rico-Guevara and Marcelo Araya-Salas. 2014. Bills as Daggers? A Test for Sexually Dimorphic Weapons in A Lekking Hummingbird. Behavioral Ecology (2014), 00(00), 1–9. doi: dx.doi.org/10.1093/beheco/aru182

Fighting for Females: The Evolution of a Hummingbird

Friday, October 31, 2014

[Herpetology • 2014] Sundaland Cnemaspis • Systematics and Natural History of Southeast Asian Rock Geckos (genus Cnemaspis Strauch, 1887) with Descriptions of Eight New Species from Malaysia, Thailand, and Indonesia



Abstract

A well-supported and well-resolved phylogeny based on a concatenated data set from one mitochondrial and two nuclear genes, six morphological characters, and nine color pattern characters for 44 of the 50 species of the Southeast Asian Rock Geckos (genus Cnemaspis Strauch, 1887) is consistent with the previous taxonomy of Cnemaspis based solely on morphology and color pattern. Cnemaspis is partitioned into four major clades that collectively contain six species groups. The monophyly of all clades and species groups is strongly supported and they are parapatrically distributed across well-established, biogeographical regions ranging from southern Vietnam westward through southern Indochina, southward through the Thai-Malay Peninsula, then eastward to Borneo. Eight new species (Cnemaspis omari sp. nov. from the Thai-Malaysian border; C. temiah sp. nov. from Cameron Highlands, Pahang, Malaysia; C. stongensis sp. nov. from Gunung Stong, Kelantan, Malaysia; C. hangus sp. nov. from Bukit Hangus, Pahang, Malaysia; C. sundagekko sp. nov. from Pulau Siantan, Indonesia; C. peninsularis sp. nov. from southern Peninsular Malaysia and Singapore, and C. mumpuniae sp. nov. and C. sundainsula sp. nov. from Pulau Natuna Besar, Indonesia) are described based on morphology and color pattern and all but C. sundagekko sp. nov. are included in the phylogenetic analyses. Cnemaspis kendallii is polyphyletic and a composite of six species. An updated taxonomy consistent with the phylogeny is proposed for all 50 species and is based on 25 morphological and 53 color pattern characters scored across 594 specimens. Cladogenetic events and biogeographical relationships within Cnemaspis were likely influenced by this group’s low vagility and the cyclical patterns of geographical and environmental changes in Sundaland over the last 25 million years and especially within the last 2.5 million years. The phylogeny indicates that nocturnality, diurnality, substrate preferences, and the presence of ocelli in the shoulder regions have evolved independently multiple times.


Keywords: Cnemaspis, Gekkonidae, Southeast Asia, new species, Sunda Shelf, biogeography, phylogeography








   




Grismer, L. L., Perry J. L. Wood, Shahrul Anuar, Awal Riyanto, Norhayati Ahmad, MohD. A. Muin, Montri Sumontha, Jesse L. Grismer, Chan K. Onn, Evan S. H. Quah & Olivier S. A. Pauwels. 2014. Systematics and Natural History of Southeast Asian Rock Geckos (genus Cnemaspis Strauch, 1887) with Descriptions of Eight New Species from Malaysia, Thailand, and Indonesia. Zootaxa. 3880(1): 1–147.

[Herpetology • 2014] Rhacophorus bengkuluensis • Mitochondrial DNA reveals A New Species of Parachuting Frog (Rhacophoridae: Rhacophorus) from Bukit Barisan, southwestern Sumatra, Indonesia


Rhacophorus bengkuluensis
Streicher, Hamidy, Harvey, Anders, Shaney, Kurniawan & Smith, 2014 | 
zootaxa.3878.4.2

Abstract
The Indonesian island of Sumatra contains several endemic species of parachuting frog of the genus Rhacophorus. Most of these are known from small type series collected from only a few localities, and consequently, many Sumatran Rhacophorus species are poorly understood. Using mitochondrial DNA (mtDNA), we investigated relationships among a group of Rhacophorus species from southern Sumatra. Our molecular analysis was based on a fragment of the 16S ribosomal subunit gene (16S) and included data derived from type specimens of two species endemic to Sumatra: R. barisani and R. catamitus. Our analyses of these data reveal that the only known female specimen of R. catamitus possesses a divergent 16S sequence compared to male specimens (8.82%; uncorrected “p” distance). Based on phylogenetic reconstructions, we found that this female specimen belongs to an unnamed taxon related to R. margaritifer from Java. Consequently, we remove the specimen from R. catamitus and describe it as Rhacophorus bengkuluensis sp. nov., a medium-sized slender tree frog with extensive brown hand webbing. We identified additional specimens referable to the new species using mtDNA and morphology. These specimens originate from low to intermediate elevations (ca. 600–1600 m) in the provinces of Bengkulu and Lampung, suggesting that R. bengkuluensis is widely distributed across the southwestern versant of the Bukit Barisan.

Keywords: Rhacophoridae, Indonesia, Sundaland, 16S, flying frog, new species, composite taxon



Streicher, Jeffrey W., Amir Hamidy, Michael B. Harvey, Ben Anders, Kyle Shaney, Nia Kurniawan and Eric N. Smith. 2014. Mitochondrial DNA reveals A New Species of Parachuting Frog (Rhacophoridae: Rhacophorus) from Sumatra. Zootaxa3878(4);

Thursday, October 30, 2014

[Herpetology • 2014] DNA Barcoding, Phylogeny and Systematics of Golden-backed Frogs (Hylarana, Ranidae) of the Western Ghats-Sri Lanka Biodiversity Hotspot, with the Description of Seven New Species



ABSTRACT 
A systematic revision of the genus Hylarana in the Western Ghats-Sri Lanka biodiversity hotspot is presented. Species delineation in Hylarana is complicated due to a lack of distinct colour differences or striking morphological characters, leading to potential misidentification. We conducted extensive surveys throughout the Western Ghats-Sri Lanka biodiversity hotspot and performed multiple gene (16S, COI and Cytb) barcoding using 103 samples collected from cultivated land and natural habitats. Genetic distance comparisons and Neighbor Joining trees indicated the presence of at least 14 candidate species in the region, supported by taxa groupings for all three genetic markers. Utilising a combination of molecular and morphological data, we describe seven new species, doubling the number of Hylarana species previously known from this region. We further demonstrate that H. temporalis, which was originally described from Sri Lanka, was misidentified with the Western Ghats endemic species for nearly 100 years. Conversely, H. aurantiaca was originally described from the Western Ghats and misidentified in Sri Lanka. Our study confirms that the distribution of H. temporalis is restricted to Sri Lanka, while H. aurantiaca is endemic to the Western Ghats, and that there are no shared Hylarana species between the two regions. Hylarana flavescens, H. intermedius and H. montanus, previously considered synonyms of H. temporalis are confirmed as valid species. Hylarana bhagmandlensis is removed from the synonymy of H. aurantiaca and placed as a junior subjective synonym of H. montanus. To establish nomenclatural stability, H. flavescens, H. malabarica and H. temporalis are lectotypified and H. intermedius is neotypified. Detailed descriptions, diagnosis, morphological and genetic comparisons, illustrations and data on distribution and natural history are provided for all species. Phylogenetic analyses based on three mitochondrial markers (16S, COI and Cytb) and a fragment of the nuclear Rag1 gene, show complete endemism of the Western Ghats-Sri Lankan species. Four major groups in this region are identified as: 1 — the Hylarana aurantiaca group, endemic to the Western Ghats; 2 — the Hylarana flavescens group, endemic to the Western Ghats; 3 — the Hylarana temporalis group, endemic to Sri Lanka; and 4 — the Hylarana malabarica group from Sri Lanka and India. The discovery of numerous morphologically cryptic Hylarana species in this region further emphasizes the benefits of utilizing an integrative taxonomic approach for uncovering hidden diversity and highlighting local endemism in the Western Ghats-Sri Lanka biodiversity hotspot.






S. D. Biju, Sonali Garg, Stephen Mahony, Nayana Wijayathilaka, Gayani Senevirathne and Madhava Meegaskumbura. 2014. DNA Barcoding, Phylogeny and Systematics of Golden-backed Frogs (Hylarana, Ranidae) of the Western Ghats-Sri Lanka Biodiversity Hotspot, with the Description of Seven New Species. Contributions to Zoology - Bijdragen tot de dierkunde. 83:269-335.

[Herpetology • 2014] Rana kauffeldi | Atlantic Coast Leopard Frog • Cryptic Diversity in Metropolis: Confirmation of a New Leopard Frog Species (Anura: Ranidae) from New York City and Surrounding Atlantic Coast Regions


Atlantic Coast Leopard Frog | Rana kauffeldi 
Feinberg, Newman, Watkins-Colwell, Schlesinger, Zarate, Curry, Shaffer & Burger, 2014 

Abstract
We describe a new cryptic species of leopard frog from the New York City metropolitan area and surrounding coastal regions. This species is morphologically similar to two largely parapatric eastern congeners, Rana sphenocephala and R. pipiens. We primarily use bioacoustic and molecular data to characterize the new species, but also examine other lines of evidence. This discovery is unexpected in one of the largest and most densely populated urban parts of the world. It also demonstrates that new vertebrate species can still be found periodically even in well-studied locales rarely associated with undocumented biodiversity. The new species typically occurs in expansive open-canopied wetlands interspersed with upland patches, but centuries of loss and impact to these habitats give some cause for conservation concern. Other concerns include regional extirpations, fragmented extant populations, and a restricted overall geographic distribution. We assign a type locality within New York City and report a narrow and largely coastal lowland distribution from central Connecticut to northern New Jersey (based on genetic data) and south to North Carolina (based on call data).


Figure 2. Photographs of Rana kauffeldi sp. nov. holotype (YPM 13217).
Male frog presented live: (a) whole body, dorsolateral view and (b) dorsal view; and preserved: (c) dorsal view and (d) ventral view.
Photographs taken by BRC (a), BZ (b), and GWC (c–d). doi: 10.1371/journal.pone.0108213.g002

Diagnosis and Description

Rana kauffeldi sp. nov.

urn:lsid:zoobank.org:act:149ED690-FA7D-4​216-A6A1-AA48CC39B292.

Holotype: YPM 13217, adult male (Fig. 2, Table 1), collected from Bloomfield region, Richmond County (Staten Island), NY, United States, on 15 November 2011, by B. R. Curry.

Etymology: The specific epithet is a patronym in recognition of Carl F. Kauffeld who studied the R. pipiens complex in the NY/NJ-metro area and concluded that three distinct species, including an undocumented central species, occurred there.

Common Name: We propose the common name ‘Atlantic Coast Leopard Frog’ for this species.



Jeremy A. Feinberg, Catherine E. Newman, Gregory J. Watkins-Colwell, Matthew D. Schlesinger, Brian Zarate, Brian R. Curry, H. Bradley Shaffer and Joanna Burger. 2014. Cryptic Diversity in Metropolis: Confirmation of a New Leopard Frog Species (Anura: Ranidae) from New York City and Surrounding Atlantic Coast Regions. PLoS ONE, 2014; 9 (10): e108213 DOI: dx.doi.org/10.1371/journal.pone.0108213

Wednesday, October 29, 2014

[Paleontology • 2014] Zaraapelta nomadis • The Ankylosaurid Dinosaurs of the Upper Cretaceous Baruungoyot and Nemegt formations of Mongolia


Life restoration of Zaraapelta nomadis
Illustration: Danielle Dufault | DOI: 10.1111/zoj.12185

Abstract
The discovery of a new ankylosaurid skull with some unusual features from the Baruungoyot Formation of Mongolia prompted a systematic review of ankylosaurid specimens from the Baruungoyot and Nemegt formations. Dyoplosaurus giganteus was found to possess no diagnostic features and is regarded as a nomen dubium. The holotype of Tarchia kielanae (previously synonymized with Tarchia gigantea) has one autapomorphy, an accessory postorbital ossification with surrounding furrow, and Tar. kielanae is here considered a valid species, making the combination Tar. gigantea unnecessary. An accessory postorbital ossification is also found in the holotype of Minotaurasaurus ramachandrani, and this species is here considered a junior synonym of Tar. kielanae. The newly described skull from the Baruungoyot Formation forms the holotype of a new genus and species, Zaraapelta nomadis gen. et sp. nov., diagnosed by unusual bilayered ornamentation on the squamosal horn and extensive postocular ornamentation. Two distinct tail club handle morphotypes are present in the Nemegt Formation and probably represent two different species. However, it is impossible to assign either tail club morphotype to the single valid species from the formation, Saichania chulsanensis, because of a lack of overlapping material. A revised phylogenetic analysis including newly identified characters found Zaraapelta nomadis to be most closely related to Tar. kielanae.  

Keywords: Ankylosauria; Ankylosauridae; Campanian; Dinosauria; Gobi Desert; Maastrichtian


skull of Zaraapelta nomadis.
photo: Jessica Tansey


Zaraapelta nomadis gen. et sp. nov.
Holotype: MPC D100/1338, a partial skull missing the rostrum.

Etymology: Zaraapelta nomadisзараа (Mongolian) hedgehog, in reference to the spiky appearance of the skull, and pelta (Latin), a small shield, in reference to the osteoderms found on all ankylosaurs; nomadis, from nomas (Latin), nomad, in reference to Mongolian travel company Nomadic Expeditions, which has facilitated many years of palaeontological fieldwork in the Gobi Desert.

Holotype locality and horizon: 43°28.345′N, 99°51.032′E (WGS 84), Hermiin Tsav, Gobi Desert, Mongolia; Baruungoyot Formation (Mid−Upper Campanian, Jerzykiewicz, 2000).

Diagnosis: Ankylosaurine ankylosaurid with bulbous cranial ornamentation. Unlike other ankylosaurs, squamosal horn has unique smooth-textured keel offset from the rest of the squamosal horn by a distinct and abrupt change to a granular texture; elaborate pattern of postocular caputegulae covering entire postocular region between squamosal and quadratojugal horns, with more postocular caputegulae than Ano. lambei, Sa. chulsanensis, or Tar. kielanae.


Victoria M. Arbour, Philip J. Currie and Demchig Badamgarav. 2014. The Ankylosaurid Dinosaurs of the Upper Cretaceous Baruungoyot and Nemegt formations of Mongolia. Zoological Journal of the Linnean Society. 


 Mongolian armoured dinosaur with spiky helmet shows Gobi Desert was hotspot for ankylosaur diversity.

[Herpetology • 2014] Cnemaspis kottiyoorensis • Description of a New Ground-Dwelling Cnemaspis Strauch, 1887 (Squamata: Gekkonidae), from Kerala, India; Allied to C. wynadensis (Beddome, 1870)



Abstract

A new species of ground dwelling gecko, Cnemaspis kottiyoorensis sp. nov. is described from the hills of Kannur and Wayanad district of Kerala, India. This medium sized, robust Cnemaspis differs from all other Indian congeners in possessing heterogeneous dorsal scales composed of granular scales with more or less regularly arranged longitudinal rows of keeled, conical tubercles running down the back; two supranasals and a long internasal separating the nasal scales; subtriangular mental with two widely separated enlarged postmentals and 1 – 3 small median scales; 19 or 20 subdigital lamellae on finger IV and 20 or 21 on toe IV; 4 or 5 femoral pores on each thigh; no preanal pores; sub-cylindrical tail without whorls of enlarged tubercles on the dorsal aspects; uniform, hexagonal median subcaudals; six supralabials and six or seven infralabials. Morphological characters and natural history traits suggest the affinity of the new species is with Cnemaspis wynadensis. Characters useful in distinguishing the new species from C. wynadensis are also provided.

Keywords: ground-dwelling; Cnemaspis kottiyoorensis sp. nov.; Cnemaspis wynadensis; Kerala; India


Vivek Philip Cyriac and P. K. Umesh. 2014. Description of a New Ground-Dwelling Cnemaspis Strauch, 1887 (Squamata: Gekkonidae), from Kerala, Allied to C. wynadensis (Beddome, 1870)Russian Journal of Herpetology. 21(3):187-194.

[Herpetology • 2014] First Record of the Gekkonid Genus Cnemaspis Strauch, 1887 from Gunung Mulu National Park, Sarawak, East Malaysia may Represent an Undescribed Species




ABSTRACT 
We provide confirmed photographic evidence for the previously overlooked occurrence of the polyphyletic Asian gecko genus Cnemaspis from Gunung Mulu National Park, the world-renowned UNESCO natural heritage site in northern Sarawak, East Malaysia. This new record from Sarawak province represents a remarkable range extension for Cnemaspis cf. kendallii by 550 km to the northeast and denotes the most northern occurrence of the genus in Borneo. Our new finding makes it very likely that these gekkonid lizards also inhabit appropriate limestone karst habitats in adjacent Sabah, Brunei, and Kalimantan. Given the visible differences in the Mulu specimen compared to those from the remaining distribution range on Borneo and the Malaysian Peninsula together with the fact that numerous Cnemaspis species are restricted to small areas, it seems plausible that another undescribed, rather cryptic and possibly locally endemic Bornean species is involved. Lastly, the new record contributes to the importance of the Mulu National Park as a major conservation area in East Malaysia of international concerns.


 Andre Koch and Sebastian Schulz. 2014. First Record of the Gekkonid Genus Cnemaspis Strauch, 1887 from Gunung Mulu National Park, Northern Sarawak, East Malaysia may Represent an Undescribed Species. Asian Herpetological Research. 5(3):209-212.
DOI: dx.doi.org/10.3724/SP.J.1245.2014.00209

Tuesday, October 28, 2014

[Botany • 2014] Three New Ginger Species (Zingiberaceae) from Laos; Curcuma corniculata and C. flammea (Curcuma subg. Ecomata) & Zingiber jiewhoei (Zingiber sect. Zingiber)




Abstract
Three new Zingiberaceae species from Laos, Curcuma corniculata and C. flammea (Curcuma subg. Ecomata), and Zingiber jiewhoei (Zingiber sect. Zingiber), are described and illustrated here.

Keywords: Curcuma; Laos; Zingiber; Zingiberaceae; gingers; new species; vulnerable




J. Leong-Škorničková; O. Šída; S. Bouamanivong; K. Souvannakhoummane; K. Phathavong. 2014. Three New Ginger Species (Zingiberaceae) from Laos. Blumea - Biodiversity, Evolution and Biogeography of Plants. 59; 106–112

[Herpetology • 2014] A Taxonomic Revision of the Asian Keelback Snakes, genus Amphiesma (Serpentes: Colubridae: Natricinae), with Description of A New Species



Abstract
The Asian keelback snakes (genus Amphiesma) are a widely distributed group of Old World natricines, inhabiting a variety of niches and exhibiting significant morphological variation. Recent molecular phylogenies suggest that this genus is not monophyletic, and that additional cryptic diversity is also likely present. We conducted a phylogenetic analysis of the group based on 3162 bp of one mitochondrial gene (Cyt. b) and three nuclear genes (C-mos, Rag1, NT3), sampling 18 species in addition to those sequenced in previous works. All analyses consistently show that Amphiesma consists of three distinct, monophyletic lineages with strong support. We divide Amphiesma into three genera, Amphiesma, Hebius, and Herpetoreas. The genus Amphiesma is monotypic, Herpetoreas contains three species, and Hebius comprises the remaining 39 species. On the basis of a combination of molecular analyses and external morphological comparisons, we describe a new species in the Herpetoreas group from China as H. burbrinki sp. nov. Several other species are shown to be non-monophyletic or contain significant levels of intraspecific genetic diversity. Another Old World natricine genera, Xenochrophis is also found to be non-monophyletic. Our results indicate that further taxonomic revisions are needed in Natricinae, at multiple levels.

Keywords: Natricinae, Amphiesma, Hebius, Herpetoreas, Snakes, new species, Southeastern Asia, systematics


Guo, Peng, Fei Zhu, Qin Liu, Liang Zhang, Jian X. Li, Yu Y. Huang & R. A. Pyron. 2014. A Taxonomic Revision of the Asian Keelback Snakes, genus Amphiesma (Serpentes: Colubridae: Natricinae), with Description of A New Species. Zootaxa 3873(4): 425–440.

[Botany • 2014] A New Combination and New Records of Tetrastigma (Vitaceae) from Thailand


A: Tetrastigma assimile (Kurz) C.L.Li ex P.Kochaiphat & Trias-Blasi;
B: T. macrocorymbum Gagnep. ex J.Wen, Boggan & Turland, and
C-D: T. triphyllum (Gagnep.) W.T. Wang var. triphyllum

 Abstract 
Four species of Tetrastigma are newly recorded for Thailand, including T. assimile (Kurz) C.L.Li ex P.Kochaiphat & Trias-Blasi, T. macrocorymbum Gagnep. ex J.Wen, Boggan & Turland, T. pyriforme Gagnep., and T. triphyllum (Gagnep.) W.T. Wang var. triphyllum. A new combination, T. assimile (Kurz) C.L.Li ex P. Kochaiphat & Trias-Blasi is provided.

Keywords: Vitaceae; Tetrastigma; Southeast Asia; Thailand


 Phongsakorn Kochaiphat, Anna Trias-Blasi and Pimwadee Pornpongrungrueng. 2014. A New Combination and New Records of Tetrastigma (Vitaceae) from Thailand. Phytotaxa. 183(4):272-278. DOI:  10.11646/phytotaxa.183.4.6

Monday, October 27, 2014

[BioGeography / Herpetology • 2014] Crossing the Line: Increasing Body Size in a trans-Wallacean Lizard Radiation (Cyrtodactylus, Gekkota)


Figure 1. Dated phylogeny (Bayesian MCC tree) for Cyrtodactylus estimated with concatenated nuclear and mitochondrial dataset showing divergence dates and ancestral state reconstructions for body length (blue smallest, green intermediate and red largest); taxon names and posterior probabilities are given in the electronic supplementary material, figure S1; exact ages and sizes of all nodes (with 95% highest posterior density (HPD) intervals) are in electronic supplementary material, file SI_4. Yellow shading denotes the two clades occurring in the Australopapuan region. Grey bars at right denote maximum body size for each species (in mm), with grey shading denoting larger-bodied clades in Asian and Australopapuan regions.


Abstract
The region between the Asian and Australian continental plates (Wallacea) demarcates the transition between two differentiated regional biotas. Despite this striking pattern, some terrestrial lineages have successfully traversed the marine barriers of Wallacea and subsequently diversified in newly colonized regions. The hypothesis that these dispersals between biogeographic realms are correlated with detectable shifts in evolutionary trajectory has however rarely been tested. Here, we analyse the evolution of body size in a widespread and exceptionally diverse group of gekkotan lizards (Cyrtodactylus), and show that a clade that has dispersed eastwards and radiated in the Australopapuan region appears to have significantly expanded its body size ‘envelope’ and repeatedly evolved gigantism. This pattern suggests that the biotic composition of the proto-Papuan Archipelago provided a permissive environment in which new colonists were released from evolutionary constraints operating to the west of Wallacea.

Keywords: Asia; Cyrtodactylus; ecological release; insular gigantism; New Guinea; Wallace's Line


Paul M. Oliver, Phillip Skipwith and Michael S. Y. Lee. 2014. Crossing the Line: Increasing Body Size in a trans-Wallacean Lizard Radiation (Cyrtodactylus, Gekkota). Biology Letters. DOI: 10.1098/rsbl.2014.0479

Geckos crossed the line and got bigger

Sunday, October 26, 2014

[Mammalogy / Venom • 2014] Anaphylactic Shock following the Bite of A Wild Kayan Slow Loris (Nycticebus kayan): Implications for Slow Loris Conservation


Figure 1. This subadult slow loris bit the victim’s finger intensely resulting in a severe wound.
(Panel A) Subadult Nycticebus kayan before the victim handled it – already a large drop of saliva can be seen protruding from the animal’s mouth. (Panel B) The bite site 12 days after the bite.
(Photos by G. Madani) DOI: 10.1186/1678-9199-20-43

Abstract
Background
Asian slow lorises (Nycticebus spp.) are one of few known venomous mammals, yet until now only one published case report has documented the impact of their venomous bite on humans. We describe the reaction of a patient to the bite of a subadult Nycticebus kayan, which occurred in the Mulu District of Sarawak in 2012.

Findings
Within minutes of the bite, the patient experienced paraesthesia in the right side of the jaw, ear and right foot. By 40 minutes, swelling of the face was pronounced. The patient was admitted to Mulu National Park Health Clinic/Klinik Kesihatan Taman Mulu Tarikh, at which time he was experiencing: swollen mouth, chest pain, mild abdominal pain, nausea, numbness of the lips and mouth, shortness of breath, weakness, agitation and the sensation of pressure in the ears due to swelling. The blood pressure was 110/76, the heart ratio was 116 and oxygen saturation was 96%. The patient was treated intramuscularly with adrenaline (0.5 mL), followed by intravenous injection of hydrocortisone (400 mg) and then intravenous fluid therapy of normal saline (500 mg). By 8 h10 the next day, the patient’s condition had significantly improved with no nausea, and with blood pressure and pulse rate stable.

Conclusions
A handful of anecdotes further support the real danger that slow loris bites pose to humans. As the illegal pet trade is a major factor in the decline of these threatened species, we hope that by reporting on the danger of handling these animals it may help to reduce their desirability as a pet.

Keywords: Anaphylaxis; Hypersensitivity; Systemic reaction; Malaysia; Adrenaline; Necrosis; Paresthesia; Animal bite; Mammal venom; Hematuria


George Madani and K Anne-Isola Nekaris. 2014. Anaphylactic Shock following the Bite of A Wild Kayan Slow Loris (Nycticebus kayan): Implications for Slow Loris Conservation. Journal of Venomous Animals and Toxins including Tropical Diseases. 20:43  doi: dx.doi.org/10.1186/1678-9199-20-43

When cute turns deadly – the story of a wildlife biologist who was bit by a venomous slow loris, and lived to tell the tale http://news.mongabay.com/2014/1024-dasgupta-slow-loris-bite.html