Showing posts with label Sirenia. Show all posts
Showing posts with label Sirenia. Show all posts

Thursday, February 10, 2022

[Mammalogy • 2022] Genomic Basis for Skin Phenotype and Cold Adaptation in the Extinct Steller’s Sea Cow Hydrodamalis gigas


Steller’s Sea Cow | Hydrodamalis gigas Zimmermann, 1780
Sirenian distribution according to the IUCN Red List (2020)

in Le Duc, Velluva, Cassatt-Johnstone, ... et Schöneberg, 2022. 
drawing by R. Ellis (1741)

Abstract
Steller’s sea cow, an extinct sirenian and one of the largest Quaternary mammals, was described by Georg Steller in 1741 and eradicated by humans within 27 years. Here, we complement Steller’s descriptions with paleogenomic data from 12 individuals. We identified convergent evolution between Steller’s sea cow and cetaceans but not extant sirenians, suggesting a role of several genes in adaptation to cold aquatic (or marine) environments. Among these are inactivations of lipoxygenase genes, which in humans and mouse models cause ichthyosis, a skin disease characterized by a thick, hyperkeratotic epidermis that recapitulates Steller’s sea cows’ reportedly bark-like skin. We also found that Steller’s sea cows’ abundance was continuously declining for tens of thousands of years before their description, implying that environmental changes also contributed to their extinction.


Molecular basis for Steller’s sea cow’s skin phenotype.
(A) Sirenian distribution according to the International Union for Conservation of Nature Red List (2020). All sequenced Steller’s sea cow individuals originate from the Commander Islands.
(B) Translated multiple sequence alignment of the ALOXE3 and ALOX12B genes showing amino acid sequence conservation corresponding to the human proteins (bold in Steller’s sea cow) and the position of the premature stop codons.
(C) Arachidonate lipoxygenases structure, which is composed of the PLAT (Polycystin-1, Lipoxygenase, and Alpha-Toxin) domain and the enzymatic LIPOXYGENASE core domain. Premature stop codons in Steller’s sea cow ALOXE3 and ALOX12B genes are depicted in red. Truncating variants described in human patients and located downstream from the Steller’s sea cow premature stop codons are depicted in black.
(D) Left: Steller’s sea cow drawing according to Steller’s description from 1741 (image by R. Ellis). Right: Image of a patient with ichthyosis; detail depicts scaling and hyperkeratosis.

Sirenian distribution according to the International Union for Conservation of Nature Red List (2020)
 
Hydrodamalis gigas Zimmermann, 1780


Diana Le Duc, Akhil Velluva, Molly Cassatt-Johnstone, ... et Torsten Schöneberg. 2022. Genomic Basis for Skin Phenotype and Cold Adaptation in the Extinct Steller’s Sea Cow. SCIENCE ADVANCES. 8, 5. DOI: 10.1126/sciadv.abl6496


Thursday, September 12, 2019

[PaleoMammalogy • 2019] The Hind Limbs of Sobrarbesiren cardieli (Eocene, Northeastern Spain) and New Insights into the Locomotion Capabilities of the Quadrupedal Sirenians


Sobrarbesiren cardieli  Díaz-Berenguer, Badiola, Moreno-Azanza & Canudo, 2018

in Díaz-Berenguer, Houssaye, Badiola & Canudo, 2019. 
Paleoillustration by Rosa Alonso. the Museo de Ciencias Naturales de la Universidad de Zaragoza

Abstract
In the transition from a terrestrial to an aquatic environment, sirenian marine mammals reduced and lost their hind limbs and developed a horizontal caudal fin, the main propulsive organ in extant sirenians. Quadrupedal forms are only known from the Eocene and are represented by three different clades: the amphibious “prorastomids,” the aquatic quadrupedal protosirenids, and Sobrarbesiren cardieli, a four-legged sirenian from the middle Eocene of Spain, considered the sister taxon of the fully aquatic Dugongidae. This ecological shift from terrestrial to an aquatic environment was naturally associated with adaptations, among others, of the skeleton. However, sirenian hind limb bones have been poorly studied because of the scarce material available in the fossil record. Here, we describe in detail the hind limb bones of Sobrarbesiren, analyzing their functional morphology and comparing them with other basal sirenians and cetaceans, and with related terrestrial mammals such as proboscideans and hyracoids. The hind limbs of Sobrarbesiren were capable of a great variety of movements. Based on the presence of a strong sacroiliac articulation, we propose that it swam by dorsoventral pelvic undulation combined with pelvic paddling analogous to extant otters and the “prorastomid” Pezosiren. We also conduct the first microanatomical analysis of hind limb bones of an Eocene sirenian. Data reveal extreme inner compactness in the Sobrarbesiren innominate and femur, with the first description of osteosclerosis in an amniote innominate combined with the highest degree of osteosclerosis observed in amniote femora. The results confirm that the microanatomical changes precede the external morphological changes in such ecological transitions. The process of adaptation of sirenians to an aquatic life was thus a more complex process than previously thought.

Keywords: Marine mammals, Aquatic adaptation, Bone microanatomy, Functional morphology 

Fig. 1: Life restoration based on cranial and postcranial bones of the middle Eocene (Lutetian) sirenian Sobrarbesiren cardieli Díaz-Berenguer et al., 2018, from the northeastern Atlantic coast (Bay of Biscay, Spain), the first adequately-known quadrupedal sirenian from Eurasia, which inhabited a deltaic plain.
Paleoillustration by Rosa Alonso. the Museo de Ciencias Naturales de la Universidad de Zaragoza



Ester Díaz-Berenguer, Alexandra Houssaye, Ainara Badiola and José Ignacio Canudo. 2019. The Hind Limbs of Sobrarbesiren cardieli (Eocene, Northeastern Spain) and New Insights into the Locomotion Capabilities of the Quadrupedal Sirenians. Journal of Mammalian Evolution. DOI: 10.1007/s10914-019-09482-9 

Ester Díaz-Berenguer, Ainara Badiola, Miguel Moreno-Azanza and José Ignacio Canudo. 2018. First Adequately-known Quadrupedal Sirenian from Eurasia (Eocene, Bay of Biscay, Huesca, northeastern Spain). Scientific Reports. 8: 5127. DOI: 10.1038/s41598-018-23355-w

Thursday, April 19, 2018

[Marine Mammal • 2018] Large Dugong (Dugong dugon) Aggregations Persist in coastal Qatar


Dugong dugon 
in Marshall, Al Ansi, Dupont, et al., 2018.
 DOI:  10.1111/mms.12497  

Dugongs (Dugong dugon) are large herbivorous marine mammals of the order Sirenia commonly referred to as sea cows. Due to their herbivorous diet, feeding and foraging dominate their natural history. Dugongs have evolved a specialized feeding apparatus for efficient grazing and processing of sea grass, which can occur by cropping blades or the excavation of roots and rhizomes (Marsh et al. 1999; Marshall et al. 2003; Lanyon and Sanson 2006a, b). The excavation of seagrasses results in signature benthic feeding trails in which 60%–90% of the vegetation may be removed (Heinsohn et al. 1977; Preen 1992, 1995; Marsh et al. 2011). Sediment plumes from dugong foraging are easily observed during aerial surveys. Due to their low reproductive output, dugongs are vulnerable to perturbations in their environment, such as habitat degradation, fisheries bycatch and contaminants (Baldwin and Cockcroft 1997, Marsh et al. 2011, Reynolds and Marshall 2012) from which populations may be slow to recover.

Dugongs of the Arabian Gulf are consistently referred to as the largest population outside Australia, and the Gulf has been cited as the most important region for dugongs in the western portion of their range (Marsh et al. 2002, 2011). These statements are based on extensive surveys conducted 30 yr ago in which the entire Arabian Gulf population was estimated at approximately 6,000 dugongs (Preen 1989, 2004; Preen et al. 2012). ....
....




   



Christopher D. Marshall, Mehsin Al Ansi, Jennifer Dupont, Christopher Warren, Ismail Al Shaikh and Joshua Cullen. 2018. Large Dugong (Dugong dugon) Aggregations Persist in coastal Qatar.  Marine Mammalogy. DOI:  10.1111/mms.12497  

Dugongs in the Arabian Gulf comprise the second largest population in the world.  Check out our new work in Mar Mamm Sci on persistent aggregations of dugongs off of NW Qatar onlinelibrary.wiley.com/journal/10.1111/(ISSN)1748-7692/earlyview …

Our article "Large Dugong (Dugong dugon) Aggregations Persist in Coastal Qatar" is publ in MarMammSci Early View. 500+ dugongs aggregate in NW Qatar seasonally-largest single group in the world. 1st known 30 yrs ago, this aggregation persists today @AggiesByTheSea @tamuresearch


Monday, March 26, 2018

[PaleoMammalogy • 2018] Sobrarbesiren cardieli • First Adequately-known Quadrupedal Sirenian from Eurasia (Eocene, Bay of Biscay, Huesca, northeastern Spain)


Sobrarbesiren cardieli
Díaz-Berenguer, Badiola, Moreno-Azanza & Canudo, 2018


Abstract
Sirenians are the only extant herbivorous mammals fully adapted to an aquatic lifestyle. They originated in Africa during the Paleocene from an undetermined clade of afrotherian mammals, and by the end of the Eocene they were widely distributed across the tropical latitudes. Here we introduce Sobrarbesiren cardieli gen. et sp. nov. It is the first adequately-known quadrupedal sirenian from Eurasia and the oldest record of this clade from western Europe. Fossils have been recovered from the middle Lutetian (SBZ15) site of Castejón de Sobrarbe-41 (Huesca, Spain), and comprise many cranial and postcranial remains, including pelvic girdle and hind limb bones, from at least six sirenian individuals of different ontogenetic stages. Sobrarbesiren shows a suite of characters previously considered synapomorphies of different clades of derived sirenians, such as the presence of the processus retroversus of the squamosal and the pterygoid fossa, combined with ancestral characters such as the presence of an alisphenoid canal, a permanent P5, at least two sacral vertebrae, a primitive pelvis and functional femora and fibulae. Sobrarbesiren is recovered as the sister taxon of Dugongidae and represents a transitional stage of adaptation to aquatic life between the amphibious quadrupedal prorastomids and the aquatic quadrupedal protosirenids.

Figure 2 Skull of Sobrarbesiren cardieli gen. et sp. nov. (holotype, MPZ 2017/1), in lateral view. (a) Photograph, (b) interpretative sketch. Sutures are marked with plain lines; dashed lines represent reconstructed sutures; shaded areas represent broken or badly preserved bones; and dotted areas represent matrix.

Anatomical abbreviations: ac, alisphenoid canal; as, alisphenoid; bo, basioccipital; bs, basisphenoid; eam, external auditory meatus; eo, exoccipital; fio, infraorbital foramen; fm, foramen magnum; fr, frontal; j, jugal; lc, lacrimal; lcf, lacrimal foramen; mf, mesorostral fossa; mx, maxilla; n, nasal; nc, nuchal crest; oc, occipital condyle; pa, parietal; pal, palatine; paop, paraoccipital process; pmx, premaxilla; pt, pterygoid; ptp, post-tympanic process; so, supraoccipital; sop, supraorbital process of frontal; sq, squamosal; tc, temporal crest; zps, zygomatic process of squamosal.

Systematic palaeontology
Class Mammalia Linnaeus, 1758
Superorder Afrotheria Stanhope et al., 1998
Mirorder Tethytheria McKenna, 1975

Order Sirenia Illiger, 1811

Family uncertain

Sobrarbesiren cardieli gen. et sp. nov.

Etymology: In reference to the Sobrarbe region (Huesca, northeastern Spain), and in honour of Jesús Cardiel Lalueza, who discovered the fossil site.

Holotype: MPZ 2017/1 a complete skull of a subadult individual which preserves alveoli of P1-4, a complete left P5, and M1-3 on both sides (Figs 2, 3, 4a,b,g,h and 5). The specimen is housed in the Museo de Ciencias Naturales de la Universidad de Zaragoza (MPZ) (Zaragoza, Spain). S. cardieli is the type species of the genus by monotypy and by original designation.

Figure 4 Skull of Sobrarbesiren cardieli gen. et sp. nov. (holotype, MPZ 2017/1), in ventral view and dentition (holotype, MPZ 2017/1 and MPZ 2017/4, MPZ 2017/5). (a,b) Skull (MPZ 2017/1) in ventral view. (a) Photograph, (b) interpretative sketch. For anatomical abbreviations see Fig. 2. (c,d) ?I1 (MPZ 2017/4) in lingual (c) and occlusal (d) views. (e,f) ?I3 (MPZ 2017/5) in lateral (e) and occlusal (f) views. (g,h) Left dental arcade of the holotype skull (MPZ 2017/1). (g) Photograph, (h) interpretative sketch. Sutures are marked with plain lines; dashed lines represent reconstructed sutures; and dotted areas represent matrix.

Dental anatomical abbreviations: ac, anterior cingular cusp; acc, anterior accessory cusp; acl, anterior cingulum; hy, hypocone; Lac, labial cusp; lac, lingual cusp; lcl, lingual cingulum; mc, main cusp; mcl, metaconule; me, metacone; pa, paracone; pc, posterior cingular cusp; pcc, posterior accesory cusp; pcl, posterior cingulum; pcv, posterior cingular valley; pr, protocone; prl, protoconule; tv, transverse valley.

Locality and horizon: Only known from the Castejón de Sobrarbe-41 fossil site (CS-41), in Castejón de Sobrarbe, Huesca, Ainsa Basin in the southern Pyrenees, Sobrarbe Formation (middle Lutetian, early middle Eocene)21 (Fig. 1b).

Diagnosis: (Ch. Character state following the descriptions and numbering sequence of Domning (1994) as updated by Vélez-Juarbe et al. (2014) and Springer et al. (2015) (e.g., Ch. 102 (0) refers to state 0 of character 102)): sirenian, based on the following synapomorphies: retracted and enlarged external nares (Ch. 8 (1)); premaxilla contacts the frontals (Ch. 9 (1)); and a P1-5, M1-3 postcanine dental formula (Ch. 155 (1)); and characterized by the following combination of characters (autapomorphies highlighted with*): upper dental formula 2.1.5.3 (I2 absent); pterygoid fossa present, extending above the level of the roof of the internal nares (Ch. 102 (1)); alisphenoid canal present (Ch. 101 (0)); rectangular and elongated basioccipital* (Fig. 4a,b and Supplementary Information Fig. S1a); hook-shaped acromion process of the scapula* (Fig. 7d), which extends just to the dorsal border of the glenoid fossa* (Fig. 7b); posterior iliac spine of the innominate bone present* (Fig. 9c); lateral iliac spine that appears abruptly on the lateral surface of the ilium with a flattened ventrolateral surface* (Fig. 9e).


Figure 10 Reconstructed composite skeleton of Sobrarbesiren cardieli gen. et sp. nov. Shaded elements represent the fossils studied.


Conclusions: 
We describe a new stem sirenian species, Sobrarbesiren cardieli, from the early middle Eocene (Lutetian, SBZ15) of the southern Pyrenees. This is the first adequately known quadrupedal sirenian from the northeastern Atlantic coast (Bay of Biscay, Spain) and the oldest sirenian from western Europe. It is represented by three skulls, cervical, dorsal, lumbar, sacral and caudal vertebrae, complete anterior, middle and posterior ribs, four scapulae, two hemipelvises, and fore and hind limb bones. This large collection of skeletal elements in different ontogenetic stages constitutes the most complete sample of an early middle Eocene sirenian in the Old World. Our phylogenetic analyses place Sobrarbesiren cardieli most parsimoniously as the sister taxon of a paraphyletic Dugongidae, which gives rise to Trichechidae. Sobrarbesiren is the only Eurasian sirenian that preserves terrestrially-functional pelvic girdle and hind limb bones. These indicate an intermediate state of adaptation to the aquatic lifestyle between other groups of quadrupedal sirenians, (namely the plesiomorphic pelvis and hind limbs of prorastomids, versus the slightly more derived limbs of the protosirenids). A further study of the functional morphology of sirenian hind limbs may be one of the keys to understanding the first stages of adaptation to aquatic life by these marine mammals.


Ester Díaz-Berenguer, Ainara Badiola, Miguel Moreno-Azanza and José Ignacio Canudo. 2018. First Adequately-known Quadrupedal Sirenian from Eurasia (Eocene, Bay of Biscay, Huesca, northeastern Spain). Scientific Reports. 8, Article number: 5127. DOI: 10.1038/s41598-018-23355-w