Showing posts with label Trionychidae. Show all posts
Showing posts with label Trionychidae. Show all posts

Wednesday, February 13, 2019

[Herpetology • 2019] Pelodiscus variegatus • A New Species of Pelodiscus (Testudines, Trionychidae) from northeastern Indochina


Pelodiscus variegatus
Farkas, Ziegler, Pham, Ong & Fritz, 2019

Photographs Thomas Ziegler. 

Abstract
A new, critically endangered species of softshell turtle, Pelodiscus variegatus sp. n. is described from north-central Vietnam and Hainan Island, China, distinguished by a unique set of genetic and morphological traits from all other congeners (P. axenaria, P. maackii, P. parviformis, P. sinensis, and unnamed genetic lineages). Morphologically, P. variegatus is characterized, among others, by its strong ventral ornamentation in all age classes.

Keywords: China, genetics, morphology, softshell turtles, Vietnam


Figure 2. Two paratypes of Pelodiscus variegatus sp. n. in life.
A, C MTD 44045, female, 75.2 mm PL B, D MTD 42834, female, 86.6 mm PL.
Photographs Thomas Ziegler. 

Pelodiscus variegatus sp. n.

Diagnosis: In the 12S rRNA gene, Pelodiscus variegatus differs from all other species and genetic lineages of Pelodiscus by the presence of cytosine (C) instead of thymine (T) at position 96 of the reference alignment (Suppl. material 1). In the cyt b gene, P. variegatus differs from all other species and genetic lineages of Pelodiscus by the presence of adenine (A) instead of cytosine (C) in position 130 and by the presence of thymine (T) instead of cytosine (C) in positions 204, 741, and 1081 of the reference alignment (Suppl. material 2). In the mtDNA fragment corresponding to the partial ND4 gene plus adjacent DNA coding for tRNAs, P. variegatus differs from all other species and genetic lineages of Pelodiscus by the presence of adenine (A) instead of guanine (G) in position 94 of the reference alignment (Suppl. material 3). These and further species-specific differences are shown in Tables 1–3.
....


Etymology: The specific epithet variegatus (spotted) is a Latin adjective in masculine gender alluding to the highly contrasting markings, especially the large plastral blotches, of the new species.

Figure 5. Habitat of Pelodiscus variegatus sp. n.: Song Rac Lake, Cam Xuyen District, Ha Tinh Province, Vietnam. Photograph An Vinh Ong. 

Figure 6. Currently known presence points of Pelodiscus species based on our own data as well as distribution maps published by the TTWG (2017) and Gong et al. (2018). Earlier records of P. sinensis from Hainan Island are referable to P. parviformis or Pelodiscus variegatus sp. n. (see Remarks).

Remarks: In addition to the characters used here for diagnosing P. variegatus, Gong et al. (2018) described some further genetic differences to other Pelodiscus species.

Fritz et al. (2010) suggested that the taxon now named Pelodiscus variegatus resembles P. parviformis, prompting the TTWG (2011, 2012, 2014, 2017) to identify the Pelodiscus records from Vietnam with the latter species. However, as explained in Gong et al. (2018), this is no longer tenable in the face of the genetic distinctness of the two species.

Traditionally, Chinese softshell turtles from Hainan were identified as P. sinensis (e.g., Pope 1935; Ernst and Barbour 1989; Ernst et al. 2000; TTWG 2011, 2012, 2014, 2017). However, the few old (early 20th century) museum specimens serving as record sources represent either P. variegatus (AMNH 28345, AMNH 30125, FMNH 6626, FMNH 6627, MVZ 23946, NMW 30219:1, NMW 30232:3) or P. parviformis (NMW 30232:1–2, NMW 30232:4–8). Thus, the native occurrence of P. sinensis sensu stricto on Hainan seems questionable, even though this species is now most likely bred there in local farms. We cannot exclude that also some of the presence points of P. sinensis from southwestern mainland China mapped by the TTWG (2017) refer to P. parviformis or P. variegatus (and in part perhaps to P. axenaria).

Conservation implications: 
While Pelodiscus sinensis is listed as “Vulnerable (VU)” by the IUCN Red List of Threatened Species (Asian Turtle Trade Working Group 2000), the conservation status of P. axenaria, P. maackii, P. parviformis, and now P. variegatus, remains unassessed, in spite of their proven genetic distinctness (Fritz et al. 2010; Yang et al. 2011; Gong et al. 2018). Given their restricted distributional ranges and the intense exploitation to which they are subjected, all these species would certainly classify for a higher category rating. In this vein, the most recent red list of Chinese vertebrates compiled by Jiang et al. (2016) proposed the conservation status of P. axenaria, P. parviformis and P. sinensis be upgraded to “Endangered (EN)” and indicated P. maackii to be “Data Deficient (DD).” Rhodin et al. (2018) suggested for P. parviformis “Critically Endangered (CR)” and for P. sinensis “Endangered (EN),” whereas P. axenaria and P. maackii were identified as “Data Deficient (DD).” Consequently, also P. variegatus, which was included in P. parviformis by Rhodin et al. (2018), should be classified as “Critically Endangered (CR).”


 Balázs Farkas, Thomas Ziegler, Cuong The Pham, An Vinh Ong and Uwe Fritz. 2019. A New Species of Pelodiscus from northeastern Indochina (Testudines, Trionychidae). ZooKeys. 824: 71-86. DOI: 10.3897/zookeys.824.31376

Sunday, October 30, 2016

[Paleontology • 2016] Palaeoamyda messeliana nov. comb. (Testudines, Pan-Trionychidae) from the Eocene Messel Pit and Geiseltal localities, Germany, Taxonomic and Phylogenetic insights


Figure 2: Palaeoamyda messeliana  SMF ME 1211. 
(A) articulated skeleton in dorsolateral view. (B) outline of the carapace and lateral plastral elements in dorsolateral view. (C) close-up of the right hindlimb. (D) close-up of the tail. (E) close-up of the right forelimb.
Abbreviations: co, costal bone; hyo, hyoplastron; hyp, hypoplastron; ne, neural bone; nu, nuchal bone.   

Abstract

Background
Abundant pan-trionychid (soft-shell) turtles specimens have been found in Eocene sequences of central Europe, particularly from two localities in Germany, the Messel Pit (a UNESCO World Natural Heritage Site) and Geiseltal, traditionally attributed to Trionyx messelianus or Rafetoides austriacus. Over the last two decades new specimens of this taxon from these two localities have been discovered and fully prepared. However, they have remained unstudied, as well as their phylogenetic position inside Pan-Trionychidae is unknown.

Results
Five new specimens of Palaeoamyda messeliana nov. comb. from Messel Pit and Geiseltal localities are fully described here. A revised diagnosis for the species is also presented here, together with its inclusion in a phylogenetic analysis of Pan-Trionychidae that shows that this species is sister to the extant Amyda cartilaginea, one of the most abundant pan-trionychid (soft-shell) turtles from Asia, both members of the clade Chitrini. The specimens described in here are among the best and most complete fossil pan-trionychid skeletons so far known.


Systematic Paleontology

TESTUDINES Batsch, 1788
CRYPTODIRA Cope, 1868

PAN-TRIONYCHIDAE Sensu Joyce, Parham & Gauthier, 2004

Palaeoamyda nov. gen.

Etymology: A fossil version of the extant genus Amyda, based on the important similarities between these two genera.

Type species: Palaeoamyda (orig. Trionyx) messeliana nov. comb. (Reinach, 1900).
Included species: Palaeoamyda messeliana nov. comb.

Diagnosis: Same as for the type species, Palaeoamyda messeliana nov. comb.


Palaeoamyda messeliana nov. comb. (Reinach, 1900)

Revised diagnosis: Palaeoamyda messeliana nov. comb., shares the following synapomorphies with Pan-Trionychidae: contribution of the jugal to the upper temporal emargination, loss of a contribution of the fused premaxilla to the external nares, absence of carapacial and plastral scutes, the absence of pygal bones, sculpturing pattern that covers all metaplastic portions of the shell bones, V-shape entoplastron. Palaeoamyda messeliana nov. comb. shares with Trionychinae the following synapomorphies: a nuchal bone at least three times wider than long, complete absence of peripheral bones, neural series always containing at least one reversal of neural orientation, and a short bridge. Inside Trionychinae (sensu Meylan, 1987), Palaeoamyda messeliana nov. comb. resembles members of Chitrini in particular Amyda cartilaginea by: having a hypoplastron having only one processus hypoplastrales medialis posterior, a pair of processus cardinus masculi anterior, and a very short processus hypoplastralis medialis anterior, a narrow and well developed metischial process of ischium, a very advanced temporal emargination reducing the area of exposure of parietals at the roof top of the skull. Differs from other chitrinins by the following plesiomorphies: costals 7 having a medial contact between each other for half of more of their total medial margin, a shallow medial notch at the anterior margin of nuchal, seven neurals, with the neural reversal of orientation at neural 6. Potential autapomorphies of Palaeoamyda messeliana nov. comb., suggested by Karl (1998) brachial horn II with several ossifications, triturating surface completely flat or with solid symphyseal notch, entoplastron having acute angle and being straight at symphysis.


Taxonomic history
Trionyx messelianus Reinach, 1900
Trionyx messelianus var. lepsiusi Harassowitz, 1919
Trionyx (Amyda) messelianus var. kochi Hummel, 1927 (new combination)
Rafetoides austriacus Karl, 1997 (junior synonym).


Localities and horizons: SMF ME specimens were collected in the Messel Pit, near Darmstadt, Germany, middle Eocene (early Lutetian, MP11, ∼47 Ma) (Lenz et al., 2015). WDC specimen was collected in Geiseltal locality, Saxony-Anhalt region, Germany. The age for this locality is middle Eocene Haubold & Hellmund (1998). However, not specific information about the horizon or any other details of the collection are known.


Edwin Cadena​. 2016. Palaeoamyda messeliana nov. comb. (Testudines, Pan-Trionychidae) from the Eocene Messel Pit and Geiseltal localities, Germany, Taxonomic and Phylogenetic insights.    PeerJ. 4:e2647. DOI: 10.7717/peerj.2647

Wednesday, March 9, 2016

[Herpetology • 2014] Phylogeography of the Asian Softshell Turtle Amyda cartilaginea (Boddaert, 1770): Evidence for A Species Complex


Fig. 3. Live Asian softshell turtles from the Great Sunda Islands.
Note in (A), (D) and (E) the saddle-shaped dark mark on the carapace.
(A) Amyda species (candidate species A?), juvenile, Loagan Bunut National Park, Sarawak, Malaysia (Borneo). Photo: Indraneil Das.
(B) Amyda cartilaginea cartilaginea (terminal clade 2), West Java, Indonesia (trade specimen). Yellow-spotted form of van Dijk (1992). Photo: Mark Auliya.
(C) Amyda species (not studied genetically). Rantauprapat, Sumatera Utara, Indonesia (northern Sumatra). Yellowspotted form of van Dijk (1992). Photo: Maren Gaulke.
(D) Amyda cartilaginea maculosa subsp. nov. (terminal clade 3), Balai Ringin, near Serian, Sarawak, Malaysia (Borneo). Photo: Indraneil Das.
(E) Amyda cartilaginea maculosa subsp. nov. (terminal clade 3), juvenile, Tanjung Lasa, Kapuas Hulu, West Kalimantan, Indonesia (Borneo). Note the different facial pattern compared to (A). Photo: Mark Auliya.

Fig. 4. Live Asian softshell turtles from Mainland Southeast Asia.
(A) Amyda ornata ornata (terminal clade 6), southern Vietnam or Cambodia. Arrow-headed form of van Dijk (1992). Note the smooth rear carapace. Photo: Timothy McCormack.
(B, C) Amyda ornata phayrei (terminal clade 5), Thailand. Note the different head colouration compared to A. o. ornata and the pronounced shell tubercles. Photos: Peter Praschag.
 (D, E) Amyda ornata subspecies (terminal clade 4), Chittagong Hills, Bangladesh. Note the pale shell colouration, the indistinct head pattern and the pronounced shell tubercles. Photos: Peter Praschag.

Abstract
Using up to 2456 bp mtDNA and up to 2716 bp nDNA of fresh samples and short sequences of three mitochondrial genes of historical museum material, we examine the phylogeography of Amyda cartilaginea. This data set provides evidence for the existence of deeply divergent genetic lineages which we interpret as three distinct species, two of which are polytypic. On the Great Sunda Islands, the distribution ranges of the two subspecies of Amyda cartilaginea (Boddaert, 1770) sensu stricto and of an undescribed species match palaeodrainage systems. Amyda cartilaginea cartilaginea occurs in the East Sunda palaeodrainage, with records in eastern Borneo and Java. Also a record from Sulawesi, most probably not representing a native population, refers to A. c. cartilaginea. In the North Sunda palaeodrainage (Sumatra, western Borneo) lives Amyda cartilaginea maculosa subsp. nov., which is described herein. One sample from the Baram river (Sarawak, Malaysia) is genetically highly distinct and represents a new species. We refrain from naming this taxon until more material becomes available for morphological characterization. For the continental populations, we resurrect the species Amyda ornata (Gray, 1861). We identify Asian softshell turtles from the Mekong drainage with the nominotypical subspecies, while the genetically distinct populations from Thailand and Myanmar are assigned to Amyda ornata phayrei (Theobald, 1868). Samples from Bangladesh are also genetically distinct and represent an undescribed subspecies and the first country record for Amyda.
Key words: Amyda cartilaginea cartilaginea; Amyda cartilaginea maculosa subsp. nov.; Amyda ornata ornata; Amyda ornata phayrei; Great Sunda Islands; Southeast Asia, Subspecies; Taxonomy; Testudines; Trionychidae.


Fig. 3. Live Asian softshell turtles from the Great Sunda Islands.
Note in (A), (D) and (E) the saddle-shaped dark mark on the carapace.
 (A) Amyda species (candidate species A?), juvenile, Loagan Bunut National Park, Sarawak, Malaysia (Borneo). Photo: Indraneil Das.
(B) Amyda cartilaginea cartilaginea (terminal clade 2), West Java, Indonesia (trade specimen). Yellow-spotted form of van Dijk (1992). Photo: Mark Auliya.
 (C) Amyda species (not studied genetically). Rantauprapat, Sumatera Utara, Indonesia (northern Sumatra). Yellowspotted form of van Dijk (1992). Photo: Maren Gaulke.
 (D) Amyda cartilaginea maculosa subsp. nov. (terminal clade 3), Balai Ringin, near Serian, Sarawak, Malaysia (Borneo). Photo: Indraneil Das.
(E) Amyda cartilaginea maculosa subsp. nov. (terminal clade 3), juvenile, Tanjung Lasa, Kapuas Hulu, West Kalimantan, Indonesia (Borneo). Note the different facial pattern compared to (A). Photo: Mark Auliya.

Fig. 4. Live Asian softshell turtles from Mainland Southeast Asia.
(A) Amyda ornata ornata (terminal clade 6), southern Vietnam or Cambodia. Arrow-headed form of van Dijk (1992). Note the smooth rear carapace. Photo: Timothy McCormack.
(B, C)
ตะพาบน้ำ | Amyda ornata phayrei (terminal clade 5), Thailand. Note the different head colouration compared to A. o. ornata and the pronounced shell tubercles. Photos: Peter Praschag.
(D, E) Amyda ornata subspecies (terminal clade 4), Chittagong Hills, Bangladesh. Note the pale shell colouration, the indistinct head pattern and the pronounced shell tubercles. Photos: Peter Praschag.

Uwe Fritz, Richard Gemel, Christian Kehlmaier, Melita Vamberger and Peter Praschag. 2014. Phylogeography of the Asian Softshell Turtle Amyda cartilaginea (Boddaert, 1770): Evidence for A Species Complex. Vertebrate Zoology. 64(2): 229–243. 


Sunday, September 13, 2015

[Herpetology • 2012] Molecular Phylogeny of the Softshell Turtle Genus Nilssonia revisited, with First Records of N. formosa for China and Wild-living N. nigricans for Bangladesh


Fig. 2. (A) Nilssonia formosa, juvenile (pet trade, Yangon, Myanmar), photo: P. Praschag; (B) N. gangetica (Brahmaputra clade), subadult (Biswanath Ghat, Assam, India), photo: P. Praschag; (C) N. gangetica (Brahmaputra clade), adult (Nagsankar Temple, east of Tezpur, Assam, India), photo: P. Praschag; (D) N. gangetica (Mahanadi clade), adult (Mahanadi River, Narsinghpur, Odisha, India), photo: P. Praschag; (E) N. hurum, juvenile (Subarnarekha River, Sibirpur, Odisha, India), photo: P. Praschag; (F) N. leithii, subadult (Supa River, Karnataka, India), photo: K. Vasudevan; (G) N. nigricans, juvenile (Jia Bhoroli River, Assam, India), photo: P. Praschag; (H) N. nigricans, subadult (Biswanath Ghat, Assam, India), photo: P. Praschag; (I) N. nigricans, adult (Tripura Sundari Temple, Udaipur, Tripura, India), photo: P. Praschag; (J, K) N. nigricans, unusually pale-coloured subadult (Manikchhari near Chittagong, Bangladesh), photos: S.M.A. Rashid.

Abstract

Based on 2354 bp of mitochondrial DNA (12S rRNA, ND4, cyt b) and 2573 bp of nuclear DNA (C-mos, ODC, R35), we re-examine the phylogenetic relationships of Nilssonia species. Individual and combined analyses of mitochondrial and nuclear DNA using Maximum Likelihood and Bayesian approaches confirm the monophyly of the genus. While mitochondrial data alone could not resolve the phylogenetic position of N. formosa, nuclear data support a sister group relationship of N. formosa and the remaining Nilssonia species. Combined analyses of mitochondrial and nuclear DNA suggest the following branching pattern, with N. formosa as the sister taxon of the remaining species: N. formosa + ((N. gangetica + N. leithii) + (N. hurum + N. nigricans)). Among the samples we studied is the first record of N. formosa for Yunnan, China, and the first record of wild-living N. nigricans for Bangladesh. In N. gangetica, each of the studied major river basins harbours a genetically distinct population, suggesting that at least three distinct management units should be distinguished: (1) Brahmaputra River; (2) Indus and Ganges Rivers plus Ganges Delta; and (3) Mahanadi River.

Key words: Reptilia, Testudines, Trionychidae, Asia, Bangladesh, China, India, Myanmar, Pakistan.




Fig. 2. (A) Nilssonia formosa, juvenile (pet trade, Yangon, Myanmar), photo: P. Praschag; (B) N. gangetica (Brahmaputra clade), subadult (Biswanath Ghat, Assam, India), photo: P. Praschag; (C) N. gangetica (Brahmaputra clade), adult (Nagsankar Temple, east of Tezpur, Assam, India), photo: P. Praschag; (D) N. gangetica (Mahanadi clade), adult (Mahanadi River, Narsinghpur, Odisha, India), photo: P. Praschag; (E) N. hurum, juvenile (Subarnarekha River, Sibirpur, Odisha, India), photo: P. Praschag; (F) N. leithii, subadult (Supa River, Karnataka, India), photo: K. Vasudevan; (G) N. nigricans, juvenile (Jia Bhoroli River, Assam, India), photo: P. Praschag; (H) N. nigricans, subadult (Biswanath Ghat, Assam, India), photo: P. Praschag; (I) N. nigricans, adult (Tripura Sundari Temple, Udaipur, Tripura, India), photo: P. Praschag; (J, K) N. nigricans, unusually pale-coloured subadult (Manikchhari near Chittagong, Bangladesh), photos: S.M.A. Rashid.


Nicole Liebing, Peter Praschag, Rupali Gosh, Karthikeyan Vasudevan, S.M.A. Rashid, Ding-qi Rao, Heiko Stuckas and Uwe Fritz. 2012. Molecular Phylogeny of the Softshell Turtle Genus Nilssonia revisited, with First Records of N. formosa for China and Wild-living N. nigricans for Bangladesh. 
Vertebrate Zoology. 62(2); 261–272. 



Das, I., Sirsi, S., Vasudevan, K., and Murthy, B.H.C.K. 2014. Nilssonia leithii (Gray 1872) – Leith’s Softshell Turtle. In: Rhodin, A.G.J., Pritchard, P.C.H., van Dijk, P.P., Saumure, R.A., Buhlmann, K.A., Iverson, J.B., and Mittermeier, R.A. (Eds.). Conservation Biology of Freshwater Turtles and Tortoises: A Compilation Project of the IUCN/SSC Tortoise and Freshwater Turtle Specialist Group. Chelonian Research Monographs. No. 5, pp. 075.1–5, doi: dx.doi.org/10.3854/crm.5.075.leithii.v1.2014, IUCN-TFTSG.org/cbftt/.

Monday, December 16, 2013

[Testudology • 2011] Rafetus vietnamensis Le, Le, Tran, Phan, Phan, Tran, Pham, Nguyen, Nong, Phan, Dinh, Truong and Ha, 2010 Another Invalid Name for an Invalid Species of SoftShell Turtle (Reptilia: Testudines: Trionychidae)


Ontogenetic Changes in head pattern of Rafetus swinhoei 

Abstract
The description of Rafetus vietnamensis Le et al., 2010 is reviewed. As the name was based on the same type material as Rafetus leloii Ha, 2000, we declare R. vietnamensis an objective synonym of R. leloii. Simultaneously, no characteristics presented by Le et al. distinguish their R. vietnamensis from Rafetus swinhoei (Gray, 1873), which confirms our view that they constitute the same biological entity.


Balázs Farkas, Minh Le, Truong Quang Nguyen. 2011. Rafetus vietnamensis Le, Le, Tran, Phan, Phan, Tran, Pham, Nguyen, Nong, Phan, Dinh, Truong and Ha, 2010 — Another Invalid Name for an Invalid Species of SoftShell Turtle (Reptilia: Testudines: Trionychidae). Russian Journal of Herpetology. 18(1):65-72.

Le T. B., Le Q. H., Tran M. L., Phan T. H., Phan M. T.,Tran T. T. H, Pham T. T., Nguyen D. T., Nong V. H.,Phan V. C., Dinh D. K., Truong N. H., and Ha D. D. 2010. Comparative morphological and DNA analysis of specimens of giant freshwater soft-shelled turtle in Viet-nam related to Hoan Kiem turtle, Tap chi Cong nghe Sinhhoc. (J. Biotechnol.), 8 (3A), 949 – 954.